WormBase Tree Display for Gene: WBGene00022360

WBGene00022360 SMap: S_parent: Sequence: Y92H12A
  Identity: Version: 3
    Name: CGC_name: ints-3 Person_evidence: WBPerson5934
      Sequence_name: Y92H12A.4
      Molecular_name (11)
      Other_name: CELE_Y92H12A.4 Accession_evidence: NDB BX284601
      Public_name: ints-3
    DB_info: Database: AceView gene 1B999
        WormQTL gene WBGene00022360
        WormFlux gene WBGene00022360
        NDB locus_tag CELE_Y92H12A.4
        Panther gene CAEEL|WormBase=WBGene00022360|UniProtKB=W6RQY9
          family PTHR13587
        NCBI gene 3565441
        RefSeq protein NM_001381224.1
            NM_001381223.1
            NR_131345.1
            NM_001306494.2
        TrEMBL UniProtAcc W6RQY9
            W6RRX0
            W6RY35
        UniProt_GCRP UniProtAcc W6RQY9
        RNAcentral URSid URS00004F90C8
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 06 Jan 2014 14:11:37 WBPerson1983 Event: Acquires_merge: WBGene00022359
        3 20 May 2019 14:10:26 WBPerson1983 Name_change: CGC_name: ints-3
      Acquires_merge: WBGene00022359
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ints
    Allele (810)
    RNASeq_FPKM (74)
    GO_annotation: 00105445
    Ortholog (37)
    Structured_description: Automated_description: Predicted to be located in cytoplasm. Is an ortholog of human INTS3 (integrator complex subunit 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y92H12A.4a
      Y92H12A.4c
      Y92H12A.4d
    Corresponding_CDS_history: Y92H12A.4:wp88
      Y92H12A.4:wp124
      Y92H12A.4:wp241
    Corresponding_transcript: Y92H12A.4b
      Y92H12A.4a.1
      Y92H12A.4a.2
      Y92H12A.4c.1
      Y92H12A.4d.1
    Other_sequence (21)
    Associated_feature: WBsf643051
      WBsf655929
      WBsf655930
      WBsf982711
      WBsf982712
      WBsf1009223
      WBsf1009224
  Experimental_info: RNAi_result: WBRNAi00117125 Inferred_automatically: RNAi_primary
      WBRNAi00058630 Inferred_automatically: RNAi_primary
      WBRNAi00058629 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026828
      Expr1029022
      Expr1039865
      Expr1039866
      Expr1162048
      Expr1162049
      Expr2008499
      Expr2026737
    Microarray_results (30)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032031:DConiospora_downregulated_OligoArray_24h
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037682:sma-2_sma-4_upregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_downregulated
      WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050686:glp-1(e2141)_downregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_specific
      WBPaper00051265:F1_morc-1(tm6048)_downregulated
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:zidovudine_24h_regulated
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055565:AVK_enriched
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056284:INTS-6_interacting_protein
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:set-2(bn129)_downregulated
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:AMso_parent
      WBPaper00061340:rect_D
      WBPaper00061340:RIA_parent
      WBPaper00061340:XXX
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:npp-8_4355-afd-1_4796
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00064071:NHR-49_interacting
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_upregulated_F1
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00031832:slr-2_regulated
      WBPaper00032165:differentially_expressed_with_age_medoid_2
      WBPaper00034661:AgNPs_downregulated
      WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
      WBPaper00037695:WC_5-day
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00041174:environmental
      WBPaper00041174:environmental_prime
      WBPaper00041606:CE_X.nematophila_regulated
    Interaction: WBInteraction000549219
      WBInteraction000559700
      WBInteraction000560313
      WBInteraction000575044
      WBInteraction000575514
  Map_info: Map: I Position: -14.5987
    Positive: Positive_clone: Y92H12A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00006241
    WBPaper00026935
    WBPaper00038491
    WBPaper00055090
    WBPaper00056284
    WBPaper00058250
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene