WormBase Tree Display for Gene: WBGene00022388

WBGene00022388 SMap: S_parent: Sequence: Y95B8A
  Identity: Version: 3
    Name: CGC_name: zfr-1 Person_evidence: WBPerson260
      Sequence_name: Y95B8A.8
      Molecular_name: Y95B8A.8
        Y95B8A.8.1
        CE45830
      Other_name: CELE_Y95B8A.8 Accession_evidence: NDB BX284601
      Public_name: zfr-1
    DB_info: Database: AceView gene 1B323
        WormQTL gene WBGene00022388
        WormFlux gene WBGene00022388
        NDB locus_tag CELE_Y95B8A.8
        Panther gene CAEEL|WormBase=WBGene00022388|UniProtKB=E9RKC7
          family PTHR45762
        NCBI gene 190806
        RefSeq protein NM_058384.5
        TREEFAM TREEFAM_ID TF320194
        TrEMBL UniProtAcc E9RKC7
        UniProt_GCRP UniProtAcc E9RKC7
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 28 Feb 2011 11:09:22 WBPerson1867 Event: Acquires_merge: WBGene00022387
        3 19 Apr 2021 01:27:01 WBPerson1983 Name_change: CGC_name: zfr-1
      Acquires_merge: WBGene00022387
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: zfr
    Allele (529)
    Strain: WBStrain00051934
    RNASeq_FPKM (74)
    GO_annotation: 00008500
      00008501
      00008502
      00008503
      00008504
      00008505
      00008506
      00008507
      00126509
      00126510
    Ortholog (51)
    Paralog: WBGene00000079 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000080 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008397 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00011253 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00018857 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Acts upstream of or within with a positive effect on axon guidance. Predicted to be part of spliceosomal complex. Is an ortholog of human ZFR (zinc finger RNA binding protein) and ZFR2 (zinc finger RNA binding protein 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y95B8A.8
    Corresponding_CDS_history: Y95B8A.8:wp159
      Y95B8A.8:wp224
    Corresponding_transcript: Y95B8A.8.1
    Other_sequence (20)
    Associated_feature (11)
    Transcription_factor: WBTranscriptionFactor000869
  Experimental_info: RNAi_result (14)
    Expr_pattern: Expr11572
      Expr1016278
      Expr1039884
      Expr1162091
      Expr2008520
      Expr2026758
    Microarray_results (35)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00042477:rsr-2(RNAi)_upregulated_RNAseq
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(gk119)_downregulated
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045420:fertilization_upregulated_protein
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_downregulated
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050990:NMDA-neuron_enriched
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00055226:ADR-2_target_N2
      WBPaper00055565:AVK_enriched
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060683:hlh-11(ko1)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:CAN
      WBPaper00061340:Neuroblast_I6_M5
      WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061527:tub-2_4713-daf-2_5288
      WBPaper00061527:Y39G10AR.18_4775-gld-4
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062347:blmp-1(tm548)_upregulated
      WBPaper00064071:NHR-49_interacting
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_25
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00032062:age_regulated_genes
      WBPaper00036286:Pattern_B
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_old
      WBPaper00050538:Fasting_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction: WBInteraction000535295
      WBInteraction000549020
      WBInteraction000561405
      WBInteraction000582208
  Map_info: Map: I Position: -18.0947
    Positive: Positive_clone: Y95B8A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00028984
    WBPaper00038491
    WBPaper00046088
    WBPaper00055090
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene