WormBase Tree Display for Gene: WBGene00023452
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| WBGene00023452 | SMap | S_parent | Sequence | D1007 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mir-353 | Person_evidence | WBPerson18 | |||||
| Sequence_name | D1007.17 | ||||||||
| Molecular_name | D1007.17 | ||||||||
| D1007.17a | |||||||||
| Other_name | cel-mir-353 | Remark | miRBase V21 import | ||||||
| CELE_D1007.17 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | mir-353 | ||||||||
| DB_info | Database | miRBase | acc | MI0000752 | |||||
| NDB | locus_tag | CELE_D1007.17 | |||||||
| NCBI | gene | 3565490 | |||||||
| RefSeq | protein | NR_002333.2 | |||||||
| RNAcentral | URSid | URS000022AB06 | |||||||
| URS00004A5363 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 22 Jul 2004 12:37:16 | WBPerson1849 | Event | Created | |||
| 2 | 26 Jul 2004 10:44:31 | WBPerson1971 | Name_change | CGC_name | mir-353 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499919 | ||||||||
| WBVar01499786 | |||||||||
| WBVar01499985 | |||||||||
| WBVar00323167 | |||||||||
| WBVar01498959 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Concise_description | mir-353 encodes a microRNA, a small non-protein coding RNA and seems to have a potential ortholog in C. briggsae; many of the known microRNAs are involved in post-transcriptional regulation of genes; the precise function of miR-353 is unknown. | Paper_evidence | WBPaper00024441 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 28 Feb 2005 00:00:00 | ||||||||
| Automated_description | Is affected by several genes including daf-12; prg-1; and alg-1 based on tiling array; RNA-seq; and microarray studies. Is affected by multi-walled carbon nanotube and nicotine based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | D1007.17 | |||||||
| D1007.17a | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expression_cluster | WBPaper00040221:DAF-12_target_ALF4 | ||||||||
| WBPaper00045019:MWCNT_upregulated | |||||||||
| WBPaper00045316:prg-1_downregulated_L4 | |||||||||
| WBPaper00049006:nicotine_upregulated_F1 | |||||||||
| WBPaper00050163:chd-3(eh4)_upregulated_24-cell-embryo | |||||||||
| WBPaper00050386:C.albicans_4h_upregulated | |||||||||
| WBPaper00051404:alg-1(gk214)_upregulated_miRNA | |||||||||
| WBPaper00051404:alg-5(ram2)_upregulated_miRNA | |||||||||
| WBPaper00056284:ints-9(RNAi)_downregulated | |||||||||
| WBPaper00057033:pry-1(mu38)_upregulated | |||||||||
| WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr | |||||||||
| WBPaper00060445:nfki-1(cer1)_upregulated_L4 | |||||||||
| WBPaper00065975:P-body_vs_oocyte_depleted | |||||||||
| WBPaper00065975:P-body_vs_WholeAnimal_depleted | |||||||||
| Map_info | Positive | Inside_rearr | nDf61 | ||||||
| Positive_clone | D1007 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | Pos_neg_data | 10934 | |||||||
| Interpolated_map_position | I | -1.04156 | |||||||
| Reference | WBPaper00024441 | ||||||||
| WBPaper00031335 | |||||||||
| Remark | The annotation of cel-mir-353 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21. | ||||||||
| Method | Gene |
