WormBase Tree Display for Gene: WBGene00077707
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| WBGene00077707 | SMap | S_parent | Sequence | F39B1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | mir-1829.3 | Paper_evidence | WBPaper00031661 | |||||
| Person_evidence | WBPerson18 | ||||||||
| Sequence_name | F39B1.2 | ||||||||
| Molecular_name | F39B1.2 | ||||||||
| F39B1.2a | |||||||||
| F39B1.2b | |||||||||
| Other_name | mir-1829c | Remark | miRBase V21 import | ||||||
| cel-mir-1829c | Remark | miRBase V21 import | |||||||
| Cel-Mir-1829-P3 | Remark | MirGeneDB 2.1 import | |||||||
| CELE_F39B1.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | mir-1829.3 | ||||||||
| DB_info | Database | miRBase | acc | MI0006771 | |||||
| MirGeneDB | cel | Cel-Mir-1829-P3 | |||||||
| NDB | locus_tag | CELE_F39B1.2 | |||||||
| NCBI | gene | 7040146 | |||||||
| RefSeq | protein | NR_024315.2 | |||||||
| RNAcentral | URSid | URS0000087309 | |||||||
| URS00002B61F0 | |||||||||
| URS0000789525 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 18 Apr 2008 10:17:32 | WBPerson1983 | Event | Created | |||
| 2 | 24 Apr 2008 10:45:50 | WBPerson2970 | Name_change | CGC_name | mir-1829c | ||||
| 3 | 22 Feb 2010 13:26:12 | WBPerson1983 | Name_change | CGC_name | mir-1829.3 | ||||
| Other_name | mir-1829c | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01499519 | ||||||||
| WBVar01760639 | |||||||||
| WBVar01499710 | |||||||||
| WBVar01498960 | |||||||||
| WBVar01500067 | |||||||||
| In_cluster | MIR-1829 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Automated_description | Is affected by several genes including eat-2; glp-4; and prg-1 based on RNA-seq studies. Is affected by nicotine and silicon dioxide nanoparticle based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | F39B1.2 | |||||||
| F39B1.2a | |||||||||
| F39B1.2b | |||||||||
| Experimental_info | RNAi_result | WBRNAi00065088 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00065087 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031974 | Inferred_automatically | RNAi_primary | |||||||
| Expression_cluster | WBPaper00045316:miRNA_N2_adult_vs_L4_upregulated_adult | ||||||||
| WBPaper00045316:miRNA_prg-1_downregulated_adult | |||||||||
| WBPaper00046156:eat-2(ad1116)_Day8_downregulated | |||||||||
| WBPaper00046303:P.aeruginosa_upregulated_miRNA | |||||||||
| WBPaper00049006:nicotine_downregulated_F1 | |||||||||
| WBPaper00049990:glp-4(bn2)_26C_vs_N2_26C_downregulated | |||||||||
| WBPaper00050370:dpy-21(e428)_L3_upregulated | |||||||||
| WBPaper00051404:alg-1(gk214)_downregulated_miRNA | |||||||||
| WBPaper00051404:alg-2(ok304)_downregulated_miRNA | |||||||||
| WBPaper00051404:alg-5(ram2)_downregulated_miRNA | |||||||||
| WBPaper00051404:alg-5(tm1163)_downregulated_miRNA | |||||||||
| WBPaper00053318:mir-71(n4115)_upregulated_miRNA | |||||||||
| WBPaper00058673:hrpk-1(tm5522)_upregulated_miRNA_L4 | |||||||||
| WBPaper00060100:SiNP_upregulated_miRNA | |||||||||
| Map_info | Map | X | Position | 22.2912 | |||||
| Positive | Positive_clone | F39B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Nomenclature inconsistency fix | Curator_confirmed | WBPerson1983 | ||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
