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WormBase Tree Display for Gene: WBGene00219701

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Name Class

WBGene00219701SMapS_parentSequenceF54F2
IdentityVersion1
NameCGC_nameanr-34Person_evidenceWBPerson6396
Sequence_nameF54F2.12
Molecular_nameF54F2.12
Other_nameCELE_F54F2.12Accession_evidenceNDBBX284603
Public_nameanr-34
DB_infoDatabaseNDBlocus_tagCELE_F54F2.12
NCBIgene24104632
RefSeqproteinNR_101840.1
RNAcentralURSidURS00005141BD
SpeciesCaenorhabditis elegans
HistoryVersion_change113 Aug 2012 10:25:35WBPerson1983EventCreated
StatusLive
Gene_infoBiotypeSO:0002182
Gene_classanr
Allele (37)
RNASeq_FPKM (74)
Structured_descriptionAutomated_descriptionEnriched in sensory neurons based on RNA-seq studies. Is affected by hsf-1; sek-1; and etr-1 based on RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_transcriptF54F2.12
Other_sequenceJI167021.1
Experimental_infoRNAi_resultWBRNAi00032811Inferred_automaticallyRNAi_primary
Expression_clusterWBPaper00045521:Oogenic
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056868:P.aeruginosa_downregulated_smallRNA
WBPaper00058948:PA14_downregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00062325:muscle_depleted_noncoding-RNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064494:postdauer_upregulated_AWA
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065841:13_1
WBPaper00065975:P-body_vs_oocyte_depleted
Map_infoMapIIIPosition-0.052286
PositivePositive_cloneF54F2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Remark[120803 pad] Created as part of a lincRNA and anti-sense RNA data submission from Nam JW, et al 2012.Paper_evidenceWBPaper00041194
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene