WormBase Tree Display for Gene: WBGene00006775
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WBGene00006775 | SMap | S_parent | Sequence | F56A12 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | unc-39 | Person_evidence | WBPerson261 | |||||
Sequence_name | F56A12.1 | ||||||||
Molecular_name | F56A12.1 | ||||||||
F56A12.1.1 | |||||||||
CE37921 | |||||||||
Other_name | mig-3 | ||||||||
ceh-35 | Paper_evidence | WBPaper00024327 | |||||||
CELE_F56A12.1 | Accession_evidence | NDB | BX284605 | ||||||
Public_name | unc-39 | ||||||||
DB_info | Database | AceView | gene | 5O855 | |||||
WormQTL | gene | WBGene00006775 | |||||||
WormFlux | gene | WBGene00006775 | |||||||
OMIM | disease | 610896 | |||||||
160900 | |||||||||
gene | 600963 | ||||||||
NDB | locus_tag | CELE_F56A12.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006775|UniProtKB=O17894 | |||||||
family | PTHR10390 | ||||||||
NCBI | gene | 191623 | |||||||
RefSeq | protein | NM_074162.3 | |||||||
SwissProt | UniProtAcc | O17894 | |||||||
UniProt_GCRP | UniProtAcc | O17894 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:42 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
2 | 09 Nov 2004 14:53:34 | WBPerson2970 | Event | Acquires_merge | WBGene00000456 | ||||
Acquires_merge | WBGene00000456 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | unc | ||||||||
Reference_allele | WBVar00143068 | ||||||||
Allele (43) | |||||||||
Legacy_information | e257 : fairly severe kinker can move forward and backward fairly active slightly dumpy. ES2 ME1. NA1. | ||||||||
ct73 : abnormal migration of CAN cells. | |||||||||
[C.elegansII] e257 : fairly severe kinker, can move forward and backward; fairly active, slightly dumpy; often withered tail as a result of80% CAN migration defect; other migrations also variably defective. 15% of hermaphrodites have third gonad arm arising from additional somatic gonad founder, "Z5". e257/Df more severe phenotypes. ES2 ME1. OA2: ct73 (pka mig-3,abnormal migration of CAN cells), rh72. [Hedgecock et al. 1987; Manser and Wood 1990; CF; NJ] | |||||||||
[Ruvkun,01/98]. so class homeobox gene. | |||||||||
Strain | WBStrain00027367 | ||||||||
WBStrain00030565 | |||||||||
WBStrain00033528 | |||||||||
WBStrain00036766 | |||||||||
WBStrain00036790 | |||||||||
WBStrain00036815 | |||||||||
WBStrain00004136 | |||||||||
WBStrain00005888 | |||||||||
WBStrain00006218 | |||||||||
WBStrain00052173 | |||||||||
WBStrain00055142 | |||||||||
WBStrain00055028 | |||||||||
WBStrain00055005 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (24) | |||||||||
Ortholog (45) | |||||||||
Paralog | WBGene00000453 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00000454 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00000455 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Panther | |||||||||
WormBase-Compara | |||||||||
WBGene00008195 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Concise_description | unc-39 encodes a homeodomain transcription factor that belongs to the Six4/5 family of homeodomain proteins that includes human Six5; UNC-39 is required for axonal pathfinding in anterior-derived neurons and for specification of most mesodermal cell types and may regulate a developmental decision between migration and differentiation; UNC-39 is expressed in the embryo in anterior neurons, posteriorly derived mesoderm (somatic gonad, M mesoblast, and possibly the coelomocytes and muIntR), the CAN neurons, and body wall muscle. | Paper_evidence | WBPaper00024327 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 17 Nov 2005 00:00:00 | ||||||||
Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including egg-laying behavior; generation of neurons; and regulation of locomotion. Located in nucleus. Expressed in several structures, including AIA; IL2 neuron; RID; coelomocyte; and neuroblasts. Used to study branchiootorenal syndrome and myotonic dystrophy type 1. Human ortholog(s) of this gene implicated in branchiootorenal syndrome 2. Is an ortholog of human SIX4 (SIX homeobox 4) and SIX5 (SIX homeobox 5). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:11722 | Homo sapiens | Paper_evidence | WBPaper00024327 | ||||
Accession_evidence | OMIM | 160900 | |||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 24 Oct 2013 00:00:00 | ||||||||
DOID:14702 | Homo sapiens | Paper_evidence | WBPaper00024327 | ||||||
Accession_evidence | OMIM | 610896 | |||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 24 Oct 2013 00:00:00 | ||||||||
Potential_model | DOID:0111424 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10891) | |||||
Disease_relevance | Mutations in the human Six5 protein have been implicated in Myotonic dystrophy 1 (DM1), a highly variable disease characterized by progressive muscle wasting, eye cataracts, cardiac abnormalities, and insulin resistance; in C. elegans, mutants in unc-29 (e257), orthologous to human Six5, show uncoordinated movement, mesodermal defects, and neuronal developmental and pathfinding defects; these studies indicate that unc-29/Six5 may be involved in development of mesoderm and differentiation and migration of neurons; the variable expressivity and penetrance of unc-39 defects are reminiscent of the pleiotropy seen in DM1 patients; some of the unc-29 mutant defects (coelomocyte specification) could be rescued by a transgene containing Six domain and homeodomain coding region from human Six5, showing a functional conservation between unc-29 and Six5; these studies indicate that unc-29 serves as a model to study how Six5 plays a role in conditions leading to myotonic dystrophy. | Homo sapiens | Paper_evidence | WBPaper00024327 | |||||
Accession_evidence | OMIM | 600963 | |||||||
160900 | |||||||||
610896 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 01 May 2014 00:00:00 | ||||||||
Models_disease_asserted | WBDOannot00000238 | ||||||||
WBDOannot00000299 | |||||||||
Molecular_info | Corresponding_CDS | F56A12.1 | |||||||
Corresponding_CDS_history | F56A12.1:wp137 | ||||||||
Corresponding_transcript | F56A12.1.1 | ||||||||
Other_sequence | Acan_isotig06578 | ||||||||
Dviv_isotig15575 | |||||||||
Dviv_isotig15576 | |||||||||
Acan_isotig06577 | |||||||||
Oden_isotig18067 | |||||||||
Tcir_isotig25512 | |||||||||
Oden_isotig25907 | |||||||||
JI463737.1 | |||||||||
Oden_isotig18066 | |||||||||
JI211494.1 | |||||||||
Associated_feature | WBsf647528 | ||||||||
WBsf662081 | |||||||||
WBsf662082 | |||||||||
WBsf662083 | |||||||||
WBsf978863 | |||||||||
WBsf1001995 | |||||||||
WBsf1020832 | |||||||||
WBsf232919 | |||||||||
WBsf232920 | |||||||||
Gene_product_binds (218) | |||||||||
Transcription_factor | WBTranscriptionFactor000219 | ||||||||
Experimental_info | RNAi_result (10) | ||||||||
Expr_pattern (12) | |||||||||
Drives_construct | WBCnstr00004349 | ||||||||
WBCnstr00011130 | |||||||||
WBCnstr00012730 | |||||||||
WBCnstr00015880 | |||||||||
WBCnstr00016522 | |||||||||
WBCnstr00034159 | |||||||||
Construct_product | WBCnstr00011130 | ||||||||
WBCnstr00015880 | |||||||||
WBCnstr00016701 | |||||||||
WBCnstr00034159 | |||||||||
Regulate_expr_cluster | WBPaper00050496:unc-39(hp701)_regulated | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (153) | |||||||||
Interaction (134) | |||||||||
Map_info | Map | V | Position | 6.28117 | Error | 0.001023 | |||
Positive | Positive_clone | F56A12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | 2_point | 132 | |||||||
839 | |||||||||
1725 | |||||||||
Multi_point (14) | |||||||||
Pos_neg_data | 297 | ||||||||
2131 | |||||||||
3132 | |||||||||
4308 | |||||||||
Reference (35) | |||||||||
Method | Gene |