WormBase Tree Display for Gene: WBGene00002220
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WBGene00002220 | SMap | S_parent | Sequence | C15C7 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | gcc-1 | Paper_evidence | WBPaper00046586 | |||
Person_evidence | WBPerson298 | ||||||
Sequence_name | C15C7.2 | ||||||
Molecular_name | C15C7.2 | ||||||
C15C7.2.1 | |||||||
CE38486 | |||||||
Other_name | klp-8 | Person_evidence | WBPerson589 | ||||
CELE_C15C7.2 | Accession_evidence | NDB | BX284606 | ||||
Public_name | gcc-1 | ||||||
DB_info | Database | AceView | gene | XD781 | |||
WormQTL | gene | WBGene00002220 | |||||
WormFlux | gene | WBGene00002220 | |||||
NDB | locus_tag | CELE_C15C7.2 | |||||
Panther | gene | CAEEL|WormBase=WBGene00002220|UniProtKB=Q18013 | |||||
family | PTHR23157 | ||||||
NCBI | gene | 180606 | |||||
RefSeq | protein | NM_076142.8 | |||||
TREEFAM | TREEFAM_ID | TF318590 | |||||
TrEMBL | UniProtAcc | Q18013 | |||||
UniProt_GCRP | UniProtAcc | Q18013 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | gcc | ||||||
Allele (70) | |||||||
Legacy_information | [Siddiqui SS ] related to kinesin like protein by sequence similarity. | ||||||
Strain | WBStrain00002621 | ||||||
WBStrain00032635 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00059939 | ||||||
00059940 | |||||||
00059941 | |||||||
Contained_in_operon | CEOPX040 | ||||||
Ortholog (24) | |||||||
Paralog | WBGene00011503 | Caenorhabditis elegans | From_analysis | Panther | |||
Structured_description | Concise_description | gcc-1 encodes a coiled-coil protein with a C-terminal Golgi-targeting GRIP domain that is the C. elegans ortholog of the human golgin, GCC1; by sequence similarity, GCC-1 is predicted to function in retrograde transport from early endosomes to the trans-Golgi network; large-scale promoter expression studies report that gcc-1 is expressed in multiple tissues including, but not limited to, the pharynx, neurons, hypodermis, and excretory cell. | Paper_evidence | WBPaper00046586 | |||
WBPaper00030963 | |||||||
WBPaper00006525 | |||||||
WBPaper00031006 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson324 | |||||||
Date_last_updated | 21 Apr 2015 00:00:00 | ||||||
Automated_description | Predicted to be located in Golgi apparatus. Expressed in several structures, including head. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C15C7.2 | |||||
Corresponding_CDS_history | C15C7.2:wp142 | ||||||
Corresponding_transcript | C15C7.2.1 | ||||||
Other_sequence (3) | |||||||
Associated_feature | WBsf647918 | ||||||
WBsf662582 | |||||||
WBsf662583 | |||||||
WBsf1004533 | |||||||
WBsf1004534 | |||||||
WBsf1004535 | |||||||
WBsf1022574 | |||||||
WBsf1022575 | |||||||
WBsf235455 | |||||||
Experimental_info | RNAi_result | WBRNAi00040595 | Inferred_automatically | RNAi_primary | |||
WBRNAi00010783 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram1422 | ||||||
Expr4831 | |||||||
Expr5269 | |||||||
Expr15134 | |||||||
Expr1012456 | |||||||
Expr1031299 | |||||||
Expr1144650 | |||||||
Expr2011960 | |||||||
Expr2030197 | |||||||
Drives_construct | WBCnstr00002705 | ||||||
WBCnstr00004401 | |||||||
WBCnstr00012262 | |||||||
WBCnstr00037959 | |||||||
Construct_product | WBCnstr00037959 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (97) | |||||||
Interaction | WBInteraction000030969 | ||||||
WBInteraction000216603 | |||||||
WBInteraction000320396 | |||||||
WBInteraction000362652 | |||||||
WBInteraction000512401 | |||||||
WBInteraction000543034 | |||||||
Map_info | Map | X | Position | -11.9123 | Error | 0.110758 | |
Positive | Positive_clone | C15C7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Y43F4 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00010295 | ||||||
WBPaper00018069 | |||||||
WBPaper00018596 | |||||||
WBPaper00019563 | |||||||
WBPaper00030963 | |||||||
WBPaper00038491 | |||||||
WBPaper00046586 | |||||||
Remark | Sequence connection from [Siddiqui SS], 02/06/11 krb. | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
C15C7.2, based on sequence similarity and subcellular localization is a GRIP domain containing Trans-Golgi Network protein of the Golgin family, not a kinesin; thus klp-8 is not an appropriate name | Paper_evidence | WBPaper00046586 | |||||
Method | Gene |