WormBase Tree Display for Gene: WBGene00002393
expand all nodes | collapse all nodes | view schema
| WBGene00002393 | SMap | S_parent | Sequence | Y65B4BR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lpr-1 | Person_evidence | WBPerson637 | |||||
| WBPerson533 | |||||||||
| Sequence_name | Y65B4BR.2 | ||||||||
| Molecular_name (18) | |||||||||
| Other_name | let-124 | Person_evidence | WBPerson533 | ||||||
| CELE_Y65B4BR.2 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | lpr-1 | ||||||||
| DB_info | Database | AceView | gene | 1B33 | |||||
| WormQTL | gene | WBGene00002393 | |||||||
| WormFlux | gene | WBGene00002393 | |||||||
| NDB | locus_tag | CELE_Y65B4BR.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002393|UniProtKB=V6CKQ7 | |||||||
| family | PTHR37437 | ||||||||
| NCBI | gene | 171648 | |||||||
| RefSeq | protein | NM_058351.5 | |||||||
| NM_001306338.4 | |||||||||
| NM_001306340.3 | |||||||||
| NM_001306339.3 | |||||||||
| NM_001306337.3 | |||||||||
| NM_001306341.2 | |||||||||
| TrEMBL | UniProtAcc | B6DX32 | |||||||
| V6CLX5 | |||||||||
| G5EEP5 | |||||||||
| V6CJJ4 | |||||||||
| V6CKQ7 | |||||||||
| B6DX33 | |||||||||
| UniProt_GCRP | UniProtAcc | V6CKQ7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 27 Nov 2007 14:42:31 | WBPerson2970 | Event | Acquires_merge | WBGene00022041 | ||||
| Name_change | CGC_name | lpr-1 | |||||||
| Sequence_name | Y65B4BR.2 | ||||||||
| Other_name | let-124 | ||||||||
| Acquires_merge | WBGene00022041 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lpr | ||||||||
| Allele (80) | |||||||||
| Legacy_information | [Johnsen RC, Rose AM ] Early larval lethal | ||||||||
| Complementation_data | [Johnsen RC, Rose AM ] complements bli-3(e767), unc-35(e259), egl-30(n686), spe-8(hc50), let-121(h810), let-122(h226), let-123(h413), let-126(h380), let-128(h253), let-129(h379), let-130(h773), let-131(h817), let-132(h464), let-546(h227), let-547(h277), let-572(h220) | ||||||||
| Strain | WBStrain00035420 | ||||||||
| WBStrain00035421 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00016732 | ||||||||
| 00016733 | |||||||||
| 00016734 | |||||||||
| 00016735 | |||||||||
| Ortholog (21) | |||||||||
| Paralog | WBGene00012257 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00012256 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00012261 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020571 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | lpr-1 encodes one of seven C. elegans proteins related to the lipocalin family of structurally related, low molecular weight, secreted proteins that bind and transport lipophilic molecules and participate in intercellular signaling; in C. elegans, LPR-1 activity is required for connectivity between the lumens of two unicellular tubes in the nematode excretory system formed by the excretory duct cell and pore cell; LPR-1 functions cell non-autonomously and its activity is required during the comma stage of embryogenesis; an lpr-1::GFP promoter fusion is expressed beginning at the comma stage of embryogenesis and continues through larval development; expression is seen in the excretory duct cell, pore cell, and the G2 cell, as well as in hyp7, the hypodermal seam cells, and P cells. | Paper_evidence | WBPaper00003985 | |||||
| WBPaper00032973 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Aug 2011 00:00:00 | ||||||||
| Automated_description | Involved in nematode larval development and tube development. Predicted to be located in extracellular region. Expressed in several structures, including P1; P12; P2; excretory system; and hypodermal cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y65B4BR.2a | |||||||
| Y65B4BR.2b | |||||||||
| Y65B4BR.2c | |||||||||
| Y65B4BR.2d | |||||||||
| Y65B4BR.2e | |||||||||
| Y65B4BR.2f | |||||||||
| Corresponding_transcript | Y65B4BR.2a.1 | ||||||||
| Y65B4BR.2b.1 | |||||||||
| Y65B4BR.2c.1 | |||||||||
| Y65B4BR.2d.1 | |||||||||
| Y65B4BR.2e.1 | |||||||||
| Y65B4BR.2f.1 | |||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf643022 | ||||||||
| WBsf980931 | |||||||||
| WBsf217146 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057912 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091035 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004842 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024244 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021105 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012218 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8580 | ||||||||
| Expr13230 | |||||||||
| Expr14487 | |||||||||
| Expr1024931 | |||||||||
| Expr1031354 | |||||||||
| Expr1161346 | |||||||||
| Expr2013259 | |||||||||
| Expr2031490 | |||||||||
| Drives_construct | WBCnstr00013379 | ||||||||
| WBCnstr00040911 | |||||||||
| Construct_product | WBCnstr00040911 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (201) | |||||||||
| Interaction | WBInteraction000052355 | ||||||||
| WBInteraction000052356 | |||||||||
| WBInteraction000503306 | |||||||||
| WBInteraction000542445 | |||||||||
| Map_info | Map | I | Position | -18.9527 | Error | 0.003336 | |||
| Positive | Inside_rearr | hDf10 | |||||||
| hDp13 | |||||||||
| Positive_clone | Y65B4BR | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Negative | Outside_rearr | hDp3 | |||||||
| sDf4 | |||||||||
| Mapping_data | 2_point | 7166 | |||||||
| 7167 | |||||||||
| 7168 | |||||||||
| 7169 | |||||||||
| Multi_point | 5723 | ||||||||
| Pos_neg_data | 9984 | ||||||||
| 9985 | |||||||||
| 9986 | |||||||||
| 9987 | |||||||||
| 10943 | |||||||||
| Reference (12) | |||||||||
| Method | Gene |
