WormBase Tree Display for Gene: WBGene00004394
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| WBGene00004394 | SMap | S_parent | Sequence | Y57A10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rol-1 | Person_evidence | WBPerson261 | |||||
| Sequence_name | Y57A10A.11 | ||||||||
| Molecular_name | Y57A10A.11 | ||||||||
| Y57A10A.11.1 | |||||||||
| CE22614 | |||||||||
| Other_name | CELE_Y57A10A.11 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | rol-1 | ||||||||
| DB_info | Database (9) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rol | ||||||||
| Reference_allele | WBVar00142954 | ||||||||
| Allele (113) | |||||||||
| Legacy_information | e91 : adults left-handed rollers. ES3 (adult) ME1. NA2 (sc22ts : left roller slightly dumpy adult at 25x). | ||||||||
| See also e91 | |||||||||
| [C.elegansII] e91 : adults left-handed rollers. ES3 (adult) ME1. OA1: sc22ts (left roller, slightly dumpy adult at 25C). [Cox et al. 1980] | |||||||||
| [Molin L] e91 sequenced in coding regions. collagen homology. predicted gene Y57A10A.11. e91 has C to T (R->C) in homology block A. similar mutations found in dpy-10,rol-6 and sqt-1 collagen genes. | |||||||||
| Strain (18) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00095863 | ||||||||
| 00095864 | |||||||||
| 00095865 | |||||||||
| 00112771 | |||||||||
| Ortholog (17) | |||||||||
| Paralog (163) | |||||||||
| Structured_description | Concise_description | rol-1 encodes a nematode cuticular collagen required for normal body morphology at the adult stage of development; rol-1 expression is under the control of the heterochronic pathway, as heterochronic mutants that synthesize adult cuticle early produce animals that roll as larvae, while heterochronic mutants that fail to execute normal adult development never display the roller phenotype. | Paper_evidence | WBPaper00000465 | |||||
| WBPaper00012408 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of cuticle. Predicted to be located in membrane. Predicted to be part of collagen trimer. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y57A10A.11 | |||||||
| Corresponding_transcript | Y57A10A.11.1 | ||||||||
| Other_sequence | CJC13194_1 | ||||||||
| JI242744.1 | |||||||||
| JI466388.1 | |||||||||
| CBC16300_1 | |||||||||
| FC820126.1 | |||||||||
| SRC00344_1 | |||||||||
| MA00638 | |||||||||
| BF400539.1 | |||||||||
| Associated_feature | WBsf222247 | ||||||||
| Experimental_info (5) | |||||||||
| Map_info | Map | II | Position | 6.89527 | Error | 0.062222 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | mC6 | |||||||
| mT1 | |||||||||
| Positive_clone | Y57A10A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | 2_point | 39 | |||||||
| 44 | |||||||||
| 271 | |||||||||
| 1535 | |||||||||
| 6102 | |||||||||
| 6154 | |||||||||
| Multi_point (41) | |||||||||
| Pos_neg_data | 1542 | ||||||||
| 1553 | |||||||||
| 2141 | |||||||||
| 1337 | |||||||||
| 1375 | |||||||||
| 1397 | |||||||||
| 3672 | |||||||||
| Landmark_gene | |||||||||
| Reference (49) | |||||||||
| Method | Gene |
