WormBase Tree Display for Gene: WBGene00002261
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| WBGene00002261 | SMap | S_parent | Sequence | F58A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ldb-1 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F58A3.1 | ||||||||
| Molecular_name (11) | |||||||||
| Other_name | CELE_F58A3.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ldb-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ldb | ||||||||
| Allele (175) | |||||||||
| Strain | WBStrain00035330 | ||||||||
| WBStrain00035331 | |||||||||
| WBStrain00035332 | |||||||||
| WBStrain00035942 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (28) | |||||||||
| Structured_description | Concise_description | ldb-1 encodes an Ldb/NLI/Clim member of the nuclear LIM binding protein family that affects coordinated locomotion, vulval development, mechanosensation, and growth of larvae and is required for transcriptional activation of mec-2; can interact with MEC-3 to activate transcription using yeast two-hybrid assays and is expressed in all neurons, vulval cells, gonadal sheath cells, and in some body muscle cells. | Paper_evidence | WBPaper00004360 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables DNA-binding transcription factor activity; DNA-binding transcription factor binding activity; and LIM domain binding activity. Involved in several processes, including mechanosensory behavior; positive regulation of vulval development; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Expressed in several structures, including AIY; body wall musculature; gonad; neurons; and vulval muscle. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F58A3.1a | |||||||
| F58A3.1b | |||||||||
| F58A3.1c | |||||||||
| Corresponding_transcript | F58A3.1a.1 | ||||||||
| F58A3.1a.2 | |||||||||
| F58A3.1b.1 | |||||||||
| F58A3.1b.2 | |||||||||
| F58A3.1c.1 | |||||||||
| Other_sequence (35) | |||||||||
| Associated_feature (36) | |||||||||
| Experimental_info | RNAi_result (28) | ||||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00001140 | ||||||||
| WBCnstr00001141 | |||||||||
| WBCnstr00001142 | |||||||||
| WBCnstr00012735 | |||||||||
| WBCnstr00013820 | |||||||||
| WBCnstr00015067 | |||||||||
| WBCnstr00036350 | |||||||||
| WBCnstr00042256 | |||||||||
| Construct_product | WBCnstr00036350 | ||||||||
| Microarray_results (38) | |||||||||
| Expression_cluster (167) | |||||||||
| Interaction | WBInteraction000003357 | ||||||||
| WBInteraction000006108 | |||||||||
| WBInteraction000006360 | |||||||||
| WBInteraction000029628 | |||||||||
| WBInteraction000033074 | |||||||||
| WBInteraction000033182 | |||||||||
| WBInteraction000033183 | |||||||||
| WBInteraction000033232 | |||||||||
| WBInteraction000033505 | |||||||||
| WBInteraction000033696 | |||||||||
| WBInteraction000033725 | |||||||||
| WBInteraction000033811 | |||||||||
| WBInteraction000033831 | |||||||||
| WBInteraction000033832 | |||||||||
| WBInteraction000034803 | |||||||||
| WBInteraction000035229 | |||||||||
| WBInteraction000035316 | |||||||||
| WBInteraction000036607 | |||||||||
| WBInteraction000041556 | |||||||||
| WBInteraction000042107 | |||||||||
| WBInteraction000043233 | |||||||||
| WBInteraction000043548 | |||||||||
| WBInteraction000046023 | |||||||||
| WBInteraction000047182 | |||||||||
| WBInteraction000049127 | |||||||||
| WBInteraction000049132 | |||||||||
| WBInteraction000049133 | |||||||||
| WBInteraction000121213 | |||||||||
| WBInteraction000135909 | |||||||||
| WBInteraction000157883 | |||||||||
| WBInteraction000159430 | |||||||||
| WBInteraction000159727 | |||||||||
| WBInteraction000162401 | |||||||||
| WBInteraction000164635 | |||||||||
| WBInteraction000166055 | |||||||||
| WBInteraction000173471 | |||||||||
| WBInteraction000173974 | |||||||||
| WBInteraction000175523 | |||||||||
| WBInteraction000229459 | |||||||||
| WBInteraction000385703 | |||||||||
| WBInteraction000387955 | |||||||||
| WBInteraction000453652 | |||||||||
| WBInteraction000460751 | |||||||||
| WBInteraction000501912 | |||||||||
| WBInteraction000501914 | |||||||||
| WBInteraction000501915 | |||||||||
| WBInteraction000519309 | |||||||||
| WBInteraction000541382 | |||||||||
| WBInteraction000547087 | |||||||||
| WBInteraction000548318 | |||||||||
| WBInteraction000550652 | |||||||||
| WBInteraction000558857 | |||||||||
| WBInteraction000569078 | |||||||||
| WBInteraction000577272 | |||||||||
| Map_info | Map | X | Position | 2.85696 | Error | 0.000347 | |||
| Positive | Positive_clone | F58A3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4384 | |||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Sequence connection from [Cassata G, Burglin T] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
