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WormBase Tree Display for Gene: WBGene00003639

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Name Class

WBGene00003639EvidencePaper_evidenceWBPaper00003416
SMapS_parentSequenceK10C3
IdentityVersion1
NameCGC_namenhr-49Person_evidenceWBPerson600
Sequence_nameK10C3.6
Molecular_name (17)
Other_nameCELE_K10C3.6Accession_evidenceNDBBX284601
Public_namenhr-49
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:32WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (78)
StrainWBStrain00031166
WBStrain00031167
WBStrain00031172
WBStrain00032408
WBStrain00034504
WBStrain00036136
WBStrain00040338
WBStrain00049816
WBStrain00051874
WBStrain00052029
RNASeq_FPKM (74)
GO_annotation (44)
Contained_in_operonCEOP1566
Ortholog (37)
Paralog (42)
Structured_descriptionConcise_descriptionnhr-49 encodes a nuclear hormone receptor (NHR) related to the mammalian HNF4 (hepatocyte nuclear factor 4) family of NHRs; nhr-49 functions as a key regulator of fat metabolism and lifespan by regulating induction of beta-oxidation genes upon food deprivation and activation of stearoyl-CoA desaturase in fed animals, respectively; NHR-49 activates transcription in conjunction with the MDT-15 mediator subunit with which it physically interacts.Paper_evidenceWBPaper00003416
WBPaper00005655
WBPaper00024532
WBPaper00025114
WBPaper00026800
WBPaper00027365
Curator_confirmedWBPerson1843
Date_last_updated17 Mar 2009 00:00:00
Automated_descriptionPredicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in determination of adult lifespan; positive regulation of transcription from RNA polymerase II promoter in response to stress; and regulation of fatty acid metabolic process. Located in cytoplasm and nucleus. Expressed in hypodermis; intestinal cell; intestine; muscle cell; and neurons. Used to study alcohol use disorder and obesity. Human ortholog(s) of this gene implicated in several diseases, including Fanconi renotubular syndrome 4; glucose metabolism disease (multiple); and liver disease (multiple). Is an ortholog of human HNF4A (hepatocyte nuclear factor 4 alpha).Paper_evidenceWBPaper00065943
Curator_confirmed (2)
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:1574Homo sapiensPaper_evidenceWBPaper00041098
Curator_confirmedWBPerson324
Date_last_updated06 Jun 2019 00:00:00
DOID:9970Homo sapiensPaper_evidenceWBPaper00025114
Curator_confirmedWBPerson324
Date_last_updated20 Sep 2018 00:00:00
Potential_modelDOID:0111099Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5024)
DOID:13809Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5024)
DOID:9993Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5024)
DOID:9352Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5024)
DOID:1686Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5024)
DOID:5082Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5024)
DOID:684Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5024)
DOID:0080760Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5024)
Models_disease_assertedWBDOannot00000610
WBDOannot00000707
WBDOannot00000708
Molecular_infoCorresponding_CDSK10C3.6a
K10C3.6b
K10C3.6c
K10C3.6d
K10C3.6e
Corresponding_transcriptK10C3.6a.1
K10C3.6a.2
K10C3.6b.1
K10C3.6b.2
K10C3.6c.1
K10C3.6d.1
K10C3.6e.1
Other_sequence (69)
Associated_feature (15)
Transcription_factorWBTranscriptionFactor000564
Experimental_infoRNAi_result (49)
Expr_patternExpr9486
Expr10378
Expr12144
Expr16231
Expr1021226
Expr1031683
Expr1154213
Expr2014198
Expr2032439
Drives_constructWBCnstr00015289
WBCnstr00020172
WBCnstr00035977
Construct_productWBCnstr00014051
WBCnstr00016239
WBCnstr00020172
WBCnstr00021645
WBCnstr00021647
WBCnstr00035977
Regulate_expr_clusterWBPaper00040134:nhr-49(RNAi)_regulated_protein
WBPaper00053798:nhr-49(nr2041)_tBOOH_upregulated
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061530:nhr-49(e2144)_upregulated
Microarray_results (39)
Expression_cluster (104)
SAGE_tag (12)
InteractionWBInteraction000005474
WBInteraction000005475
WBInteraction000005768
WBInteraction000005769
WBInteraction000005770
WBInteraction000005771
WBInteraction000005772
WBInteraction000005773
WBInteraction000005774
WBInteraction000005775
WBInteraction000005776
WBInteraction000005777
WBInteraction000005778
WBInteraction000005779
WBInteraction000005780
WBInteraction000005781
WBInteraction000005782
WBInteraction000006060
WBInteraction000006163
WBInteraction000006367
WBInteraction000008979
WBInteraction000008980
WBInteraction000008981
WBInteraction000008982
WBInteraction000008983
WBInteraction000008984
WBInteraction000009023
WBInteraction000009024
WBInteraction000029789
WBInteraction000031351
WBInteraction000031353
WBInteraction000031355
WBInteraction000031373
WBInteraction000031374
WBInteraction000031375
WBInteraction000031376
WBInteraction000031377
WBInteraction000031378
WBInteraction000031379
WBInteraction000031380
WBInteraction000031381
WBInteraction000031382
WBInteraction000192431
WBInteraction000331259
WBInteraction000332919
WBInteraction000339473
WBInteraction000384246
WBInteraction000384251
WBInteraction000384252
WBInteraction000384253
WBInteraction000384256
WBInteraction000384257
WBInteraction000500592
WBInteraction000502078
WBInteraction000502079
WBInteraction000502080
WBInteraction000502081
WBInteraction000502082
WBInteraction000502083
WBInteraction000502084
WBInteraction000502085
WBInteraction000502086
WBInteraction000502087
WBInteraction000502088
WBInteraction000503600
WBInteraction000504913
WBInteraction000504918
WBInteraction000504919
WBInteraction000504920
WBInteraction000504921
WBInteraction000504922
WBInteraction000504923
WBInteraction000504924
WBInteraction000504925
WBInteraction000504926
WBInteraction000507500
WBInteraction000507501
WBInteraction000507502
WBInteraction000507503
WBInteraction000507504
WBInteraction000507505
WBInteraction000507506
WBInteraction000507507
WBInteraction000507509
WBInteraction000507510
WBInteraction000507511
WBInteraction000507513
WBInteraction000509691
WBInteraction000509692
WBInteraction000509693
WBInteraction000509694
WBInteraction000509695
WBInteraction000509696
WBInteraction000509697
WBInteraction000509698
WBInteraction000509699
WBInteraction000509700
WBInteraction000509701
WBInteraction000509702
WBInteraction000509703
WBInteraction000509704
WBInteraction000509705
WBInteraction000509706
WBInteraction000509707
WBInteraction000509708
WBInteraction000509709
WBInteraction000509710
WBInteraction000509711
WBInteraction000509712
WBInteraction000509713
WBInteraction000509714
WBInteraction000509715
WBInteraction000509716
WBInteraction000509717
WBInteraction000509718
WBInteraction000509719
WBInteraction000509720
WBInteraction000509721
WBInteraction000509722
WBInteraction000509723
WBInteraction000509724
WBInteraction000509725
WBInteraction000509726
WBInteraction000509727
WBInteraction000509728
WBInteraction000509729
WBInteraction000514035
WBInteraction000514036
WBInteraction000514037
WBInteraction000514038
WBInteraction000514039
WBInteraction000514151
WBInteraction000514152
WBInteraction000514153
WBInteraction000514154
WBInteraction000514155
WBInteraction000514156
WBInteraction000514158
WBInteraction000514159
WBInteraction000514160
WBInteraction000514161
WBInteraction000514162
WBInteraction000514973
WBInteraction000514974
WBInteraction000514975
WBInteraction000514976
WBInteraction000516075
WBInteraction000516077
WBInteraction000517286
WBInteraction000517287
WBInteraction000517288
WBInteraction000517806
WBInteraction000517807
WBInteraction000517808
WBInteraction000517879
WBInteraction000518706
WBInteraction000521484
WBInteraction000521958
WBInteraction000524595
WBInteraction000524888
WBInteraction000524889
WBInteraction000524902
WBInteraction000524903
WBInteraction000525132
WBInteraction000525133
WBInteraction000525423
WBInteraction000525424
WBInteraction000525425
WBInteraction000525633
WBInteraction000525703
WBInteraction000525770
WBInteraction000525888
WBInteraction000526551
WBInteraction000526816
WBInteraction000526828
WBInteraction000526829
WBInteraction000526850
WBInteraction000526870
WBInteraction000526873
WBInteraction000526874
WBInteraction000526875
WBInteraction000526876
WBInteraction000526889
WBInteraction000526943
WBInteraction000526944
WBInteraction000526945
WBInteraction000526946
WBInteraction000526947
WBInteraction000526948
WBInteraction000526949
WBInteraction000526950
WBInteraction000526951
WBInteraction000526952
WBInteraction000526953
WBInteraction000526954
WBInteraction000526955
WBInteraction000526956
WBInteraction000526957
WBInteraction000526958
WBInteraction000526959
WBInteraction000526960
WBInteraction000526961
WBInteraction000526962
WBInteraction000526963
WBInteraction000526964
WBInteraction000526965
WBInteraction000526966
WBInteraction000526967
WBInteraction000526968
WBInteraction000526969
WBInteraction000526970
WBInteraction000526971
WBInteraction000526972
WBInteraction000526973
WBInteraction000526974
WBInteraction000526975
WBInteraction000526976
WBInteraction000527013
WBInteraction000527021
WBInteraction000527024
WBInteraction000527026
WBInteraction000527054
WBInteraction000528304
WBInteraction000528413
WBInteraction000528505
WBInteraction000528548
WBInteraction000528698
WBInteraction000528715
WBInteraction000528742
WBInteraction000529238
WBInteraction000529351
WBInteraction000529488
WBInteraction000529810
WBInteraction000529915
WBInteraction000530058
WBInteraction000530087
WBInteraction000530280
WBInteraction000530643
WBInteraction000530938
WBInteraction000531137
WBInteraction000531189
WBInteraction000531359
WBInteraction000531818
WBInteraction000531944
WBInteraction000532603
WBInteraction000532761
WBInteraction000533188
WBInteraction000533354
WBInteraction000533383
WBInteraction000533470
WBInteraction000533524
WBInteraction000533692
WBInteraction000533830
WBInteraction000534657
WBInteraction000535176
WBInteraction000535260
WBInteraction000535448
WBInteraction000535452
WBInteraction000535502
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WBInteraction000535512
WBInteraction000539237
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WBInteraction000539485
WBInteraction000539486
WBInteraction000539487
WBInteraction000539488
WBInteraction000539489
WBInteraction000539490
WBInteraction000539491
WBInteraction000539492
WBInteraction000539493
WBInteraction000539494
WBInteraction000539495
WBInteraction000539496
WBInteraction000539497
WBInteraction000539498
WBInteraction000539499
WBInteraction000539500
WBInteraction000539501
WBInteraction000539502
WBInteraction000541580
WBInteraction000543115
WBInteraction000547114
WBInteraction000547655
WBInteraction000548016
WBInteraction000548053
WBInteraction000548431
WBInteraction000548432
WBInteraction000549116
WBInteraction000552153
WBInteraction000556229
WBInteraction000556230
WBInteraction000558510
WBInteraction000559384
WBInteraction000560322
WBInteraction000560754
WBInteraction000564761
WBInteraction000565042
WBInteraction000565061
WBInteraction000568359
WBInteraction000568691
WBInteraction000568857
WBInteraction000573265
WBInteraction000574151
WBInteraction000574565
WBInteraction000574912
WBInteraction000576817
WBInteraction000576818
WBInteraction000576819
WBInteraction000582238
WBInteraction000584434
WBInteraction000584435
WBInteraction000584436
WBInteraction000584437
WBInteraction000584438
WBInteraction000584439
WBInteraction000584440
WBInteraction000584441
WBInteraction000584442
WBInteraction000584443
WBInteraction000584444
WBInteraction000584445
WBInteraction000584446
WBInteraction000584447
WBInteraction000584448
WBInteraction000584449
WBInteraction000584450
WBInteraction000584451
WBInteraction000584452
WBInteraction000584453
WBInteraction000584454
WBInteraction000584455
WBInteraction000584456
WBInteraction000584457
WBInteraction000584458
WBInteraction000584459
WBInteraction000584460
WBInteraction000584461
WBInteraction000584462
WBInteraction000584463
WBInteraction000584464
WBInteraction000584465
WBInteraction000584466
WBInteraction000584467
WBInteraction000584468
WBInteraction000584469
WBInteraction000584470
WBInteraction000584471
WBInteraction000584472
WBInteraction000584473
WBInteraction000584474
WBInteraction000584475
WBInteraction000584476
WBInteraction000584477
WBInteraction000584478
WBInteraction000584479
WBInteraction000584480
WBInteraction000584481
WBInteraction000584482
WBInteraction000584483
WBInteraction000584484
WBInteraction000584485
WBInteraction000584486
WBInteraction000584487
WBInteraction000584488
WBInteraction000584489
WBInteraction000584490
WBInteraction000584491
WBInteraction000584492
WBInteraction000585146
WBProcessWBbiopr:00000001
WBbiopr:00000121
Map_infoMapIPosition3.96404Error0.005389
PositivePositive_cloneK10C3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point5149
4447
Pseudo_map_position
Reference (157)
PictureWBPicture0000013096
WBPicture0000013097
WBPicture0000013098
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene