WormBase Tree Display for Gene: WBGene00003791

WBGene00003791 SMap: S_parent: Sequence: F07A11
  Identity: Version: 2
    Name: CGC_name: npp-5 Person_evidence: WBPerson1780
      Sequence_name: F07A11.3
      Molecular_name: F07A11.3
        F07A11.3.1
        CE03145
      Other_name: Nup107 Paper_evidence: WBPaper00026834
        CELE_F07A11.3 Accession_evidence: NDB BX284602
      Public_name: npp-5
    DB_info: Database: AceView gene 2L888
        WormQTL gene WBGene00003791
        WormFlux gene WBGene00003791
        NDB locus_tag CELE_F07A11.3
        Panther gene CAEEL|WormBase=WBGene00003791|UniProtKB=Q19131
          family PTHR13003
        NCBI gene 174779
        RefSeq protein NM_064080.6
        SwissProt UniProtAcc Q19131
        UniProt_GCRP UniProtAcc Q19131
        OMIM gene 607617
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:33 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 15 Mar 2007 08:57:28 WBPerson2970 Name_change: Other_name: Nup107
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: npp
    Allele (69)
    Strain: WBStrain00036637
      WBStrain00003837
      WBStrain00003840
      WBStrain00003841
    RNASeq_FPKM (74)
    GO_annotation (37)
    Contained_in_operon: CEOP2718
    Ortholog (31)
    Structured_description: Automated_description: Predicted to be a structural constituent of nuclear pore. Involved in several processes, including kinetochore assembly; protein localization to kinetochore; and regulation of nucleus size. Located in nuclear membrane. Part of nuclear pore. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome; nephrotic syndrome type 11; and ovarian dysgenesis 6. Is an ortholog of human NUP107 (nucleoporin 107). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0080694 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:29914)
      DOID:0080498 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:29914)
      DOID:0080385 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:29914)
  Molecular_info: Corresponding_CDS: F07A11.3
    Corresponding_transcript: F07A11.3.1
    Other_sequence: CBC07538_1
      CR03653
      CRC05182_1
      CR04595
      CR03960
      CRC05640_1
    Associated_feature (3)
  Experimental_info: RNAi_result (11)
    Expr_pattern: Expr1027606
      Expr1031777
      Expr1147819
      Expr2014390
      Expr2032631
    Drives_construct: WBCnstr00035865
    Construct_product: WBCnstr00005566
      WBCnstr00014542
      WBCnstr00035865
    Antibody: WBAntibody00001891
      WBAntibody00002304
    Microarray_results (20)
    Expression_cluster (110)
    Interaction: WBInteraction000031448
      WBInteraction000050745
      WBInteraction000052717
      WBInteraction000052718
      WBInteraction000136055
      WBInteraction000153122
      WBInteraction000170625
      WBInteraction000170989
      WBInteraction000171313
      WBInteraction000175829
      WBInteraction000182195
      WBInteraction000184092
      WBInteraction000184495
      WBInteraction000184843
      WBInteraction000187565
      WBInteraction000189705
      WBInteraction000193365
      WBInteraction000198063
      WBInteraction000200382
      WBInteraction000205420
      WBInteraction000205908
      WBInteraction000210397
      WBInteraction000211506
      WBInteraction000219736
      WBInteraction000220426
      WBInteraction000222034
      WBInteraction000222245
      WBInteraction000224605
      WBInteraction000225557
      WBInteraction000232068
      WBInteraction000233192
      WBInteraction000238979
      WBInteraction000240077
      WBInteraction000242733
      WBInteraction000249310
      WBInteraction000250114
      WBInteraction000251726
      WBInteraction000252512
      WBInteraction000253763
      WBInteraction000253766
      WBInteraction000257216
      WBInteraction000259537
      WBInteraction000260608
      WBInteraction000263897
      WBInteraction000265810
      WBInteraction000266629
      WBInteraction000266811
      WBInteraction000266881
      WBInteraction000271906
      WBInteraction000272617
      WBInteraction000273234
      WBInteraction000273964
      WBInteraction000280685
      WBInteraction000285728
      WBInteraction000285913
      WBInteraction000287242
      WBInteraction000287851
      WBInteraction000292699
      WBInteraction000293042
      WBInteraction000296204
      WBInteraction000297456
      WBInteraction000305862
      WBInteraction000311984
      WBInteraction000313520
      WBInteraction000314426
      WBInteraction000314487
      WBInteraction000314606
      WBInteraction000318171
      WBInteraction000325204
      WBInteraction000325455
      WBInteraction000326411
      WBInteraction000328397
      WBInteraction000329744
      WBInteraction000330034
      WBInteraction000330601
      WBInteraction000338599
      WBInteraction000339156
      WBInteraction000339218
      WBInteraction000342496
      WBInteraction000342520
      WBInteraction000346839
      WBInteraction000348178
      WBInteraction000348316
      WBInteraction000348854
      WBInteraction000352788
      WBInteraction000354932
      WBInteraction000355177
      WBInteraction000360679
      WBInteraction000365997
      WBInteraction000366964
      WBInteraction000367041
      WBInteraction000369168
      WBInteraction000369282
      WBInteraction000371592
      WBInteraction000371913
      WBInteraction000376901
      WBInteraction000378173
      WBInteraction000379494
      WBInteraction000380758
      WBInteraction000381484
      WBInteraction000383938
      WBInteraction000384949
      WBInteraction000385252
      WBInteraction000385415
      WBInteraction000386571
      WBInteraction000388430
      WBInteraction000390331
      WBInteraction000391420
      WBInteraction000393336
      WBInteraction000396094
      WBInteraction000396756
      WBInteraction000397601
      WBInteraction000399482
      WBInteraction000404641
      WBInteraction000405719
      WBInteraction000406231
      WBInteraction000408594
      WBInteraction000410042
      WBInteraction000410438
      WBInteraction000411673
      WBInteraction000413869
      WBInteraction000415649
      WBInteraction000419894
      WBInteraction000420329
      WBInteraction000421680
      WBInteraction000422789
      WBInteraction000427383
      WBInteraction000428514
      WBInteraction000429504
      WBInteraction000432222
      WBInteraction000432616
      WBInteraction000434382
      WBInteraction000437607
      WBInteraction000438176
      WBInteraction000439647
      WBInteraction000445054
      WBInteraction000449403
      WBInteraction000451990
      WBInteraction000453981
      WBInteraction000454356
      WBInteraction000456006
      WBInteraction000458943
      WBInteraction000502133
      WBInteraction000502600
      WBInteraction000519271
      WBInteraction000519272
      WBInteraction000519273
      WBInteraction000519274
      WBInteraction000519275
      WBInteraction000519276
      WBInteraction000519277
      WBInteraction000519278
      WBInteraction000519279
      WBInteraction000519314
      WBInteraction000519315
      WBInteraction000519316
      WBInteraction000519317
      WBInteraction000519318
      WBInteraction000519321
      WBInteraction000522514
      WBInteraction000540459
      WBInteraction000541793
      WBInteraction000551897
      WBInteraction000575101
  Map_info: Map: II Position: 3.78634 Error: 0.003937
    Positive: Positive_clone: F07A11 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00006202
    WBPaper00026834
    WBPaper00032497
    WBPaper00036964
    WBPaper00040620
    WBPaper00040897
    WBPaper00061547
    WBPaper00063941
    WBPaper00064641
    WBPaper00065742
  Remark: Sequence connection from [Askjaer P, Mattaj IW]. krb 13/11/01
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene