WormBase Tree Display for Gene: WBGene00010036
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| WBGene00010036 | SMap | S_parent | Sequence | F54C8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cpar-1 | Person_evidence | WBPerson1816 | |||||
| Sequence_name | F54C8.2 | ||||||||
| Molecular_name | F54C8.2 | ||||||||
| F54C8.2.1 | |||||||||
| CE00188 | |||||||||
| Other_name | CELE_F54C8.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | cpar-1 | ||||||||
| DB_info | Database | AceView | gene | 3K519 | |||||
| WormQTL | gene | WBGene00010036 | |||||||
| WormFlux | gene | WBGene00010036 | |||||||
| NDB | locus_tag | CELE_F54C8.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010036|UniProtKB=P34440 | |||||||
| family | PTHR11426 | ||||||||
| NCBI | gene | 186223 | |||||||
| RefSeq | protein | NM_066672.5 | |||||||
| SwissProt | UniProtAcc | P34440 | |||||||
| TREEFAM | TREEFAM_ID | TF352440 | |||||||
| UniProt_GCRP | UniProtAcc | P34440 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 13 Oct 2006 14:39:21 | WBPerson2970 | Name_change | CGC_name | cpar-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cpar | ||||||||
| Allele | WBVar01500260 | ||||||||
| WBVar00405361 | |||||||||
| WBVar00405362 | |||||||||
| WBVar00405363 | |||||||||
| WBVar01499774 | |||||||||
| WBVar00251466 | |||||||||
| WBVar01645868 | |||||||||
| WBVar01645869 | |||||||||
| WBVar00850471 | |||||||||
| WBVar00850472 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (36) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | cpar-1 encodes one of two C. elegans proteins homologous to the inner kinetochore histone H3 variant CENP-A (the other is encoded by hcp-3); loss of cpar-1 and hcp-3 activity via RNAi results in mitotic chromosome segregation defects, but no significant defects in meiotic chromosome segregation; when expressed in the germline using the pie-1 promoter, a CPAR-1::GFP fusion protein localizes to meiotic chromosomes during late prophase/prometaphase of meiosis I, but is not seen on chromosomes during meiosis II. | Paper_evidence | WBPaper00026943 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 22 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Involved in mitotic sister chromatid segregation. Located in condensed chromosome and nucleus. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54C8.2 | |||||||
| Corresponding_transcript | F54C8.2.1 | ||||||||
| Associated_feature | WBsf993685 | ||||||||
| WBsf225561 | |||||||||
| Experimental_info | RNAi_result (37) | ||||||||
| Expr_pattern | Expr4208 | ||||||||
| Expr10028 | |||||||||
| Expr1013615 | |||||||||
| Expr1034370 | |||||||||
| Expr1152062 | |||||||||
| Expr1200194 | |||||||||
| Expr2010474 | |||||||||
| Expr2028714 | |||||||||
| Drives_construct | WBCnstr00014533 | ||||||||
| WBCnstr00015011 | |||||||||
| WBCnstr00031720 | |||||||||
| Construct_product | WBCnstr00004908 | ||||||||
| WBCnstr00014533 | |||||||||
| WBCnstr00015011 | |||||||||
| WBCnstr00021737 | |||||||||
| WBCnstr00031720 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (170) | |||||||||
| Interaction | WBInteraction000006217 | ||||||||
| WBInteraction000008319 | |||||||||
| WBInteraction000008320 | |||||||||
| WBInteraction000008321 | |||||||||
| WBInteraction000008322 | |||||||||
| WBInteraction000162806 | |||||||||
| WBInteraction000184458 | |||||||||
| WBInteraction000210502 | |||||||||
| WBInteraction000216168 | |||||||||
| WBInteraction000221476 | |||||||||
| WBInteraction000222972 | |||||||||
| WBInteraction000248241 | |||||||||
| WBInteraction000255427 | |||||||||
| WBInteraction000258022 | |||||||||
| WBInteraction000288603 | |||||||||
| WBInteraction000334802 | |||||||||
| WBInteraction000338301 | |||||||||
| WBInteraction000363338 | |||||||||
| WBInteraction000395041 | |||||||||
| WBInteraction000401850 | |||||||||
| WBInteraction000402267 | |||||||||
| WBInteraction000406596 | |||||||||
| WBInteraction000428339 | |||||||||
| WBInteraction000435832 | |||||||||
| WBInteraction000450753 | |||||||||
| WBInteraction000523109 | |||||||||
| WBInteraction000536654 | |||||||||
| WBInteraction000536729 | |||||||||
| WBInteraction000536740 | |||||||||
| WBInteraction000556973 | |||||||||
| Map_info | Map | III | Position | 0.495229 | Error | 0.005206 | |||
| Positive | Positive_clone | F54C8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026943 | ||||||||
| WBPaper00027235 | |||||||||
| WBPaper00046714 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
