WormBase Tree Display for Gene: WBGene00011111

WBGene00011111 SMap: S_parent: Sequence: R07E5
  Identity: Version: 3
    Name: CGC_name: snfc-5 Person_evidence: WBPerson1684
      Sequence_name: R07E5.3
      Molecular_name: R07E5.3
        R07E5.3.1
        CE01045
      Other_name: swsn-5 Person_evidence: WBPerson552
            WBPerson407
        CELE_R07E5.3 Accession_evidence: NDB BX284603
      Public_name: snfc-5
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 19 Dec 2008 11:28:55 WBPerson2970 Name_change: CGC_name: snfc-5
        3 11 Feb 2011 15:19:10 WBPerson2970 Name_change: Other_name: swsn-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snfc
    Allele (16)
    Strain: WBStrain00031523
    RNASeq_FPKM (74)
    GO_annotation (15)
    Contained_in_operon: CEOP3184
    Ortholog (40)
    Structured_description: Concise_description: snfc-5 encodes a homolog of SNF5/Ini1, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; snfc-5 may be involved in asymmetric cell division of the T cells. Paper_evidence: WBPaper00004350
          Curator_confirmed: WBPerson1843
            WBPerson1823
            WBPerson567
          Date_last_updated: 19 Dec 2008 00:00:00
      Automated_description: Predicted to enable transcription coactivator activity. Predicted to be involved in chromatin remodeling and positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of brahma complex; nBAF complex; and npBAF complex. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); central nervous system cancer (multiple); and connective tissue cancer (multiple). Is an ortholog of human SMARCB1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model (13)
  Molecular_info: Corresponding_CDS: R07E5.3
    Corresponding_transcript: R07E5.3.1
    Other_sequence (62)
    Associated_feature: WBsf645087
      WBsf645088
      WBsf658482
      WBsf224731
    Transcription_factor: WBTranscriptionFactor000485
  Experimental_info: RNAi_result (73)
    Expr_pattern: Expr1024565
      Expr1034885
      Expr1155171
      Expr1200191
      Expr2015953
      Expr2034188
    Drives_construct: WBCnstr00030922
    Construct_product: WBCnstr00018595
      WBCnstr00030922
    Microarray_results (26)
    Expression_cluster (116)
    Interaction: WBInteraction000006438
      WBInteraction000006520
      WBInteraction000006545
      WBInteraction000006775
      WBInteraction000007674
      WBInteraction000009454
      WBInteraction000009502
      WBInteraction000032639
      WBInteraction000032735
      WBInteraction000032756
      WBInteraction000032768
      WBInteraction000032786
      WBInteraction000032836
      WBInteraction000032872
      WBInteraction000032892
      WBInteraction000032950
      WBInteraction000032966
      WBInteraction000033025
      WBInteraction000033050
      WBInteraction000033076
      WBInteraction000033326
      WBInteraction000033350
      WBInteraction000033394
      WBInteraction000033545
      WBInteraction000033674
      WBInteraction000033711
      WBInteraction000033747
      WBInteraction000033751
      WBInteraction000033766
      WBInteraction000034368
      WBInteraction000034583
      WBInteraction000034980
      WBInteraction000035187
      WBInteraction000035399
      WBInteraction000035473
      WBInteraction000036335
      WBInteraction000036381
      WBInteraction000036492
      WBInteraction000037166
      WBInteraction000037720
      WBInteraction000037804
      WBInteraction000037888
      WBInteraction000037992
      WBInteraction000038350
      WBInteraction000040202
      WBInteraction000040630
      WBInteraction000041225
      WBInteraction000041307
      WBInteraction000041435
      WBInteraction000041667
      WBInteraction000042434
      WBInteraction000042435
      WBInteraction000042436
      WBInteraction000043121
      WBInteraction000043314
      WBInteraction000043451
      WBInteraction000043612
      WBInteraction000043652
      WBInteraction000043653
      WBInteraction000043654
      WBInteraction000043907
      WBInteraction000043947
      WBInteraction000044919
      WBInteraction000045329
      WBInteraction000045926
      WBInteraction000046007
      WBInteraction000046147
      WBInteraction000046659
      WBInteraction000046667
      WBInteraction000046867
      WBInteraction000047073
      WBInteraction000047151
      WBInteraction000047346
      WBInteraction000047500
      WBInteraction000047562
      WBInteraction000047835
      WBInteraction000047855
      WBInteraction000048487
      WBInteraction000048678
      WBInteraction000048966
      WBInteraction000049098
      WBInteraction000049231
      WBInteraction000049457
      WBInteraction000049546
      WBInteraction000049715
      WBInteraction000049892
      WBInteraction000050287
      WBInteraction000050496
      WBInteraction000051056
      WBInteraction000051102
      WBInteraction000051148
      WBInteraction000051194
      WBInteraction000051240
      WBInteraction000051286
      WBInteraction000051332
      WBInteraction000103141
      WBInteraction000103554
      WBInteraction000110336
      WBInteraction000118843
      WBInteraction000139321
      WBInteraction000140497
      WBInteraction000140498
      WBInteraction000140499
      WBInteraction000140500
      WBInteraction000140501
      WBInteraction000140502
      WBInteraction000141267
      WBInteraction000141268
      WBInteraction000141269
      WBInteraction000141270
      WBInteraction000141271
      WBInteraction000142264
      WBInteraction000142265
      WBInteraction000142266
      WBInteraction000142267
      WBInteraction000142356
      WBInteraction000148660
      WBInteraction000148675
      WBInteraction000148677
      WBInteraction000150963
      WBInteraction000157868
      WBInteraction000157908
      WBInteraction000158534
      WBInteraction000159211
      WBInteraction000159226
      WBInteraction000159227
      WBInteraction000159228
      WBInteraction000159229
      WBInteraction000159446
      WBInteraction000161438
      WBInteraction000162623
      WBInteraction000162624
      WBInteraction000164638
      WBInteraction000167150
      WBInteraction000172043
      WBInteraction000174306
      WBInteraction000195995
      WBInteraction000199103
      WBInteraction000211599
      WBInteraction000226175
      WBInteraction000247799
      WBInteraction000261636
      WBInteraction000279612
      WBInteraction000282420
      WBInteraction000311057
      WBInteraction000317613
      WBInteraction000333977
      WBInteraction000340588
      WBInteraction000340927
      WBInteraction000343386
      WBInteraction000357065
      WBInteraction000360098
      WBInteraction000364780
      WBInteraction000368556
      WBInteraction000376261
      WBInteraction000393117
      WBInteraction000401221
      WBInteraction000406551
      WBInteraction000408389
      WBInteraction000410269
      WBInteraction000424761
      WBInteraction000434411
      WBInteraction000450541
      WBInteraction000456777
      WBInteraction000460503
      WBInteraction000465451
      WBInteraction000465452
      WBInteraction000465453
      WBInteraction000465454
      WBInteraction000465455
      WBInteraction000465456
      WBInteraction000465457
      WBInteraction000465458
      WBInteraction000465459
      WBInteraction000465460
      WBInteraction000465461
      WBInteraction000465462
      WBInteraction000465463
      WBInteraction000465464
      WBInteraction000466142
      WBInteraction000469690
      WBInteraction000469847
      WBInteraction000469848
      WBInteraction000469849
      WBInteraction000470657
      WBInteraction000472982
      WBInteraction000475012
      WBInteraction000475045
      WBInteraction000520896
      WBInteraction000520925
      WBInteraction000522137
      WBInteraction000522141
      WBInteraction000523555
      WBInteraction000523556
      WBInteraction000527630
      WBInteraction000528040
      WBInteraction000539077
      WBInteraction000541871
      WBInteraction000559421
      WBInteraction000561170
      WBInteraction000561260
      WBInteraction000568048
      WBInteraction000568686
      WBInteraction000568729
      WBInteraction000569765
      WBInteraction000571919
      WBInteraction000574771
      WBInteraction000575805
      WBInteraction000577259
    WBProcess: WBbiopr:00000025
  Map_info: Map: III Position: -3.1776 Error: 0.000495
    Positive: Positive_clone: R07E5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00024054
    WBPaper00027307
    WBPaper00027309
    WBPaper00033090
    WBPaper00036260
    WBPaper00038491
    WBPaper00046494
    WBPaper00055090
    WBPaper00064941
    WBPaper00065308
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene