WormBase Tree Display for Gene: WBGene00011880

WBGene00011880 SMap: S_parent: Sequence: T21B6
  Identity: Version: 1
    Name: Sequence_name: T21B6.3
      Molecular_name: T21B6.3
        T21B6.3.1
        CE31621
      Other_name: CELE_T21B6.3 Accession_evidence: NDB BX284606
      Public_name: T21B6.3
    DB_info: Database: AceView gene XL564
        WormQTL gene WBGene00011880
        WormFlux gene WBGene00011880
        NDB locus_tag CELE_T21B6.3
        Panther gene CAEEL|WormBase=WBGene00011880|UniProtKB=Q22631
          family PTHR22906
        NCBI gene 181284
        RefSeq protein NM_077428.6
        TREEFAM TREEFAM_ID TF317240
        TrEMBL UniProtAcc Q22631
        UniProt_GCRP UniProtAcc Q22631
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (75)
    RNASeq_FPKM (74)
    Ortholog (25)
    Paralog (12)
    Structured_description: Concise_description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). Paper_evidence: WBPaper00005068
            WBPaper00012788
            WBPaper00012830
            WBPaper00012882
            WBPaper00012897
            WBPaper00013003
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in muscle cell based on tiling array; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by twenty-two chemicals including 1-methylnicotinamide; bisphenol A; and Zidovudine based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: Thrombospondin type-1 (TSP1) repeat; Thrombospondin type-1 (TSP1) repeat superfamily; Thrombospondin type 1 domain; and PAN/Apple domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T21B6.3
    Corresponding_CDS_history: T21B6.3:wp83
    Corresponding_transcript: T21B6.3.1
    Other_sequence (129)
    Associated_feature: WBsf654377
      WBsf1006862
      WBsf1006863
      WBsf1023791
      WBsf237920
      WBsf237921
  Experimental_info: RNAi_result: WBRNAi00053705 Inferred_automatically: RNAi_primary
      WBRNAi00018959 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021265
      Expr1035234
      Expr1157257
      Expr2006311
      Expr2024532
    Drives_construct: WBCnstr00030314
    Construct_product: WBCnstr00030314
    Microarray_results (19)
    Expression_cluster (203)
    Interaction: WBInteraction000030082
      WBInteraction000030622
      WBInteraction000031866
      WBInteraction000031953
      WBInteraction000032144
      WBInteraction000032250
      WBInteraction000032311
      WBInteraction000032312
      WBInteraction000032313
      WBInteraction000032314
      WBInteraction000032315
      WBInteraction000137511
      WBInteraction000146407
      WBInteraction000147046
      WBInteraction000180307
      WBInteraction000217975
      WBInteraction000221853
      WBInteraction000232145
      WBInteraction000241476
      WBInteraction000272885
      WBInteraction000276150
      WBInteraction000287312
      WBInteraction000317895
      WBInteraction000325810
      WBInteraction000326884
      WBInteraction000338550
      WBInteraction000345284
      WBInteraction000349156
      WBInteraction000361127
      WBInteraction000374195
      WBInteraction000376406
      WBInteraction000384380
      WBInteraction000384530
      WBInteraction000384553
      WBInteraction000384554
      WBInteraction000384555
      WBInteraction000390379
      WBInteraction000392560
      WBInteraction000415669
      WBInteraction000417657
      WBInteraction000418304
      WBInteraction000420150
      WBInteraction000424086
      WBInteraction000511594
      WBInteraction000512524
      WBInteraction000513352
      WBInteraction000513353
      WBInteraction000513355
      WBInteraction000513356
      WBInteraction000513966
      WBInteraction000514812
      WBInteraction000514813
      WBInteraction000514816
      WBInteraction000514817
      WBInteraction000514818
      WBInteraction000514882
      WBInteraction000514892
      WBInteraction000515081
      WBInteraction000515097
      WBInteraction000515542
      WBInteraction000515566
      WBInteraction000515569
      WBInteraction000515647
      WBInteraction000515653
      WBInteraction000515654
      WBInteraction000515657
      WBInteraction000515659
      WBInteraction000521477
      WBInteraction000522086
      WBInteraction000522121
      WBInteraction000544403
      WBInteraction000544414
      WBInteraction000546290
      WBInteraction000550746
      WBInteraction000553215
      WBInteraction000553883
      WBInteraction000559937
      WBInteraction000571814
      WBInteraction000572703
      WBInteraction000580782
  Map_info: Positive: Positive_clone: T21B6 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X 2.71591
  Reference: WBPaper00055090
  Method: Gene