WormBase Tree Display for Gene: WBGene00015743
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| WBGene00015743 | SMap | S_parent | Sequence | C13F10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | soap-1 | Person_evidence | WBPerson1963 | |||||
| Sequence_name | C13F10.4 | ||||||||
| Molecular_name | C13F10.4 | ||||||||
| C13F10.4.1 | |||||||||
| CE08145 | |||||||||
| Other_name | CELE_C13F10.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | soap-1 | ||||||||
| DB_info | Database | AceView | gene | 5H686 | |||||
| WormQTL | gene | WBGene00015743 | |||||||
| WormFlux | gene | WBGene00015743 | |||||||
| NDB | locus_tag | CELE_C13F10.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015743|UniProtKB=O01485 | |||||||
| family | PTHR21663 | ||||||||
| NCBI | gene | 179109 | |||||||
| RefSeq | protein | NM_072427.6 | |||||||
| TREEFAM | TREEFAM_ID | TF300706 | |||||||
| TrEMBL | UniProtAcc | O01485 | |||||||
| UniProt_GCRP | UniProtAcc | O01485 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 May 2014 11:44:19 | WBPerson2970 | Name_change | CGC_name | soap-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | soap | ||||||||
| Allele (129) | |||||||||
| Strain | WBStrain00001229 | ||||||||
| WBStrain00001480 | |||||||||
| WBStrain00037397 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00024746 | ||||||||
| 00024747 | |||||||||
| 00024748 | |||||||||
| 00024749 | |||||||||
| 00024750 | |||||||||
| 00024751 | |||||||||
| 00024752 | |||||||||
| Contained_in_operon | CEOP5144 | ||||||||
| Ortholog (50) | |||||||||
| Structured_description | Automated_description | Involved in apical protein localization. Predicted to be located in endocytic vesicle. Is an ortholog of human HEATR5A (HEAT repeat containing 5A) and HEATR5B (HEAT repeat containing 5B). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C13F10.4 | |||||||
| Corresponding_transcript | C13F10.4.1 | ||||||||
| Other_sequence (30) | |||||||||
| Associated_feature | WBsf233921 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00040448 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00008385 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024545 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071541 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103186 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071677 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002372 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5257 | ||||||||
| Expr5258 | |||||||||
| Expr1016218 | |||||||||
| Expr1036735 | |||||||||
| Expr1144515 | |||||||||
| Expr2015991 | |||||||||
| Expr2034226 | |||||||||
| Drives_construct | WBCnstr00002121 | ||||||||
| WBCnstr00028603 | |||||||||
| Construct_product | WBCnstr00016472 | ||||||||
| WBCnstr00028603 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (96) | |||||||||
| Interaction | WBInteraction000049201 | ||||||||
| WBInteraction000133800 | |||||||||
| WBInteraction000187451 | |||||||||
| WBInteraction000218978 | |||||||||
| WBInteraction000242559 | |||||||||
| WBInteraction000251946 | |||||||||
| WBInteraction000256099 | |||||||||
| WBInteraction000256407 | |||||||||
| WBInteraction000257209 | |||||||||
| WBInteraction000258696 | |||||||||
| WBInteraction000270358 | |||||||||
| WBInteraction000274947 | |||||||||
| WBInteraction000279470 | |||||||||
| WBInteraction000283460 | |||||||||
| WBInteraction000312481 | |||||||||
| WBInteraction000328404 | |||||||||
| WBInteraction000331628 | |||||||||
| WBInteraction000342163 | |||||||||
| WBInteraction000349388 | |||||||||
| WBInteraction000349950 | |||||||||
| WBInteraction000354707 | |||||||||
| WBInteraction000356980 | |||||||||
| WBInteraction000362837 | |||||||||
| WBInteraction000373387 | |||||||||
| WBInteraction000379770 | |||||||||
| WBInteraction000394531 | |||||||||
| WBInteraction000395293 | |||||||||
| WBInteraction000397051 | |||||||||
| WBInteraction000401902 | |||||||||
| WBInteraction000405148 | |||||||||
| WBInteraction000422949 | |||||||||
| WBInteraction000432582 | |||||||||
| WBInteraction000438684 | |||||||||
| WBInteraction000446553 | |||||||||
| WBInteraction000452582 | |||||||||
| WBInteraction000544771 | |||||||||
| WBInteraction000580924 | |||||||||
| Map_info | Map | V | Position | 0.633074 | |||||
| Positive | Positive_clone | C13F10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031006 | ||||||||
| WBPaper00032078 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046645 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064898 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
