WormBase Tree Display for Gene: WBGene00019711
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| WBGene00019711 | SMap | S_parent | Sequence | M01E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ctnb-1 | |||||||
| Sequence_name | M01E11.2 | ||||||||
| Molecular_name | M01E11.2 | ||||||||
| M01E11.2.1 | |||||||||
| CE12290 | |||||||||
| Other_name | CELE_M01E11.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ctnb-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Mar 2020 17:43:06 | WBPerson1983 | Name_change | CGC_name | ctnb-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ctnb | ||||||||
| Allele (26) | |||||||||
| Strain | WBStrain00035252 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00050880 | ||||||||
| 00050881 | |||||||||
| 00050882 | |||||||||
| Contained_in_operon | CEOP1260 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Automated_description | Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Expressed in head muscle; intestine; nerve ring; pharynx; and ventral nerve cord. Human ortholog(s) of this gene implicated in colorectal cancer; morbid obesity; and primary immunodeficiency disease. Is an ortholog of human CTNNBL1 (catenin beta like 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15879) | ||||
| DOID:612 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15879) | ||||||
| DOID:11981 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15879) | ||||||
| Molecular_info | Corresponding_CDS | M01E11.2 | |||||||
| Corresponding_transcript | M01E11.2.1 | ||||||||
| Other_sequence (54) | |||||||||
| Associated_feature | WBsf643300 | ||||||||
| WBsf217680 | |||||||||
| WBsf217681 | |||||||||
| WBsf217682 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050753 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00062318 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034352 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004005 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117082 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1540 | ||||||||
| Expr7619 | |||||||||
| Expr1023093 | |||||||||
| Expr1038516 | |||||||||
| Expr1154450 | |||||||||
| Expr2005124 | |||||||||
| Expr2023345 | |||||||||
| Drives_construct | WBCnstr00001069 | ||||||||
| WBCnstr00012764 | |||||||||
| WBCnstr00025655 | |||||||||
| Construct_product | WBCnstr00025655 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (75) | |||||||||
| Interaction | WBInteraction000030667 | ||||||||
| WBInteraction000031628 | |||||||||
| WBInteraction000032016 | |||||||||
| WBInteraction000146095 | |||||||||
| WBInteraction000170371 | |||||||||
| WBInteraction000175145 | |||||||||
| WBInteraction000184553 | |||||||||
| WBInteraction000212940 | |||||||||
| WBInteraction000223513 | |||||||||
| WBInteraction000230948 | |||||||||
| WBInteraction000232294 | |||||||||
| WBInteraction000234071 | |||||||||
| WBInteraction000235697 | |||||||||
| WBInteraction000239733 | |||||||||
| WBInteraction000247632 | |||||||||
| WBInteraction000257216 | |||||||||
| WBInteraction000300012 | |||||||||
| WBInteraction000310745 | |||||||||
| WBInteraction000321895 | |||||||||
| WBInteraction000325731 | |||||||||
| WBInteraction000331447 | |||||||||
| WBInteraction000341773 | |||||||||
| WBInteraction000360989 | |||||||||
| WBInteraction000376684 | |||||||||
| WBInteraction000384324 | |||||||||
| WBInteraction000394980 | |||||||||
| WBInteraction000397471 | |||||||||
| WBInteraction000407102 | |||||||||
| WBInteraction000430594 | |||||||||
| WBInteraction000434085 | |||||||||
| WBInteraction000450216 | |||||||||
| WBInteraction000452203 | |||||||||
| WBInteraction000458487 | |||||||||
| WBInteraction000459284 | |||||||||
| WBInteraction000459337 | |||||||||
| Map_info | Map | I | Position | 0.222598 | |||||
| Positive | Positive_clone | M01E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032961 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
