WormBase Tree Display for Gene: WBGene00019900

WBGene00019900 SMap: S_parent: Sequence: R05G6
  Identity: Version: 2
    Name: CGC_name: vdac-1 Person_evidence: WBPerson610
      Sequence_name: R05G6.7
      Molecular_name: R05G6.7
        R05G6.7.1
        CE29443
      Other_name: CELE_R05G6.7 Accession_evidence: NDB BX284604
      Public_name: vdac-1
    DB_info: Database: AceView gene 4I272
        WormQTL gene WBGene00019900
        WormFlux gene WBGene00019900
        NDB locus_tag CELE_R05G6.7
        Panther gene CAEEL|WormBase=WBGene00019900|UniProtKB=Q21752
          family PTHR11743
        NCBI gene 177524
        RefSeq protein NM_068810.9
        SwissProt UniProtAcc Q21752
        TREEFAM TREEFAM_ID TF315091
        UniProt_GCRP UniProtAcc Q21752
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Feb 2013 11:46:04 WBPerson2970 Name_change: CGC_name: vdac-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vdac
    Allele (28)
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (49)
    Structured_description: Automated_description: Predicted to enable voltage-gated monoatomic anion channel activity. Involved in mitochondrion organization. Acts upstream of or within with a positive effect on olfactory behavior. Located in mitochondrion. Expressed in AWCL and AWCR. Human ortholog(s) of this gene implicated in Parkinson's disease; Parkinsonism; and prostate cancer. Is an ortholog of human VDAC1 (voltage dependent anion channel 1) and VDAC2 (voltage dependent anion channel 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:10283 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12669)
      DOID:14330 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12669)
      DOID:0080855 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:12669)
  Molecular_info: Corresponding_CDS: R05G6.7
    Corresponding_transcript: R05G6.7.1
    Other_sequence (117)
    Associated_feature: WBsf655519
      WBsf668032
      WBsf981784
      WBsf996995
      WBsf1017725
      WBsf230282
      WBsf230283
  Experimental_info: RNAi_result: WBRNAi00116401 Inferred_automatically: RNAi_primary
      WBRNAi00051327 Inferred_automatically: RNAi_primary
      WBRNAi00017468 Inferred_automatically: RNAi_primary
      WBRNAi00116348 Inferred_automatically: RNAi_primary
      WBRNAi00034629 Inferred_automatically: RNAi_primary
    Expr_pattern (11)
    Drives_construct: WBCnstr00003485
      WBCnstr00021055
      WBCnstr00025510
    Construct_product: WBCnstr00021054
      WBCnstr00025510
    Microarray_results (20)
    Expression_cluster (168)
    Interaction: WBInteraction000031963
      WBInteraction000042566
      WBInteraction000045783
      WBInteraction000048442
      WBInteraction000110279
      WBInteraction000113105
      WBInteraction000118519
      WBInteraction000133681
      WBInteraction000135176
      WBInteraction000135706
      WBInteraction000136653
      WBInteraction000137527
      WBInteraction000145556
      WBInteraction000147088
      WBInteraction000150009
      WBInteraction000157700
      WBInteraction000158372
      WBInteraction000159479
      WBInteraction000159955
      WBInteraction000160693
      WBInteraction000160913
      WBInteraction000160914
      WBInteraction000160915
      WBInteraction000160916
      WBInteraction000160917
      WBInteraction000162457
      WBInteraction000163028
      WBInteraction000163773
      WBInteraction000167757
      WBInteraction000168481
      WBInteraction000169492
      WBInteraction000171356
      WBInteraction000174500
      WBInteraction000174501
      WBInteraction000174502
      WBInteraction000174503
      WBInteraction000192049
      WBInteraction000195018
      WBInteraction000198550
      WBInteraction000198787
      WBInteraction000204634
      WBInteraction000205178
      WBInteraction000206059
      WBInteraction000206287
      WBInteraction000222309
      WBInteraction000227669
      WBInteraction000228046
      WBInteraction000229056
      WBInteraction000233434
      WBInteraction000246684
      WBInteraction000248625
      WBInteraction000250896
      WBInteraction000252153
      WBInteraction000255904
      WBInteraction000256296
      WBInteraction000270292
      WBInteraction000270294
      WBInteraction000272895
      WBInteraction000274818
      WBInteraction000275873
      WBInteraction000281907
      WBInteraction000286062
      WBInteraction000289151
      WBInteraction000293162
      WBInteraction000296572
      WBInteraction000296573
      WBInteraction000302323
      WBInteraction000302632
      WBInteraction000307673
      WBInteraction000311118
      WBInteraction000312746
      WBInteraction000316925
      WBInteraction000320069
      WBInteraction000327321
      WBInteraction000327481
      WBInteraction000332635
      WBInteraction000333551
      WBInteraction000345049
      WBInteraction000347325
      WBInteraction000350637
      WBInteraction000352615
      WBInteraction000352870
      WBInteraction000354999
      WBInteraction000355000
      WBInteraction000357200
      WBInteraction000358397
      WBInteraction000367646
      WBInteraction000369250
      WBInteraction000370593
      WBInteraction000373200
      WBInteraction000377425
      WBInteraction000378192
      WBInteraction000382111
      WBInteraction000386472
      WBInteraction000387121
      WBInteraction000387144
      WBInteraction000390128
      WBInteraction000394519
      WBInteraction000397276
      WBInteraction000397277
      WBInteraction000397579
      WBInteraction000404872
      WBInteraction000424293
      WBInteraction000424504
      WBInteraction000425881
      WBInteraction000427804
      WBInteraction000434768
      WBInteraction000435372
      WBInteraction000435722
      WBInteraction000441747
      WBInteraction000448681
      WBInteraction000452095
      WBInteraction000453871
      WBInteraction000454002
      WBInteraction000454207
      WBInteraction000454885
      WBInteraction000456368
      WBInteraction000459857
      WBInteraction000460954
      WBInteraction000464027
      WBInteraction000464602
      WBInteraction000464712
      WBInteraction000464866
      WBInteraction000465675
      WBInteraction000465676
      WBInteraction000465677
      WBInteraction000465678
      WBInteraction000465679
      WBInteraction000465680
      WBInteraction000465681
      WBInteraction000465682
      WBInteraction000465683
      WBInteraction000465684
      WBInteraction000465685
      WBInteraction000465686
      WBInteraction000465687
      WBInteraction000465688
      WBInteraction000465689
      WBInteraction000465690
      WBInteraction000466027
      WBInteraction000466885
      WBInteraction000467246
      WBInteraction000469904
      WBInteraction000470591
      WBInteraction000471815
      WBInteraction000472098
      WBInteraction000472482
      WBInteraction000473124
      WBInteraction000475096
      WBInteraction000475421
      WBInteraction000536498
      WBInteraction000549754
      WBInteraction000552652
      WBInteraction000553598
      WBInteraction000560375
      WBInteraction000560382
      WBInteraction000560383
      WBInteraction000560856
      WBInteraction000561763
      WBInteraction000562006
      WBInteraction000562478
      WBInteraction000564393
      WBInteraction000565819
      WBInteraction000566349
      WBInteraction000566628
      WBInteraction000567043
      WBInteraction000567821
      WBInteraction000568124
      WBInteraction000569378
      WBInteraction000569621
      WBInteraction000572240
      WBInteraction000572478
      WBInteraction000572879
      WBInteraction000573893
      WBInteraction000578139
      WBInteraction000581129
      WBInteraction000585743
      WBInteraction000586491
  Map_info: Map: IV Position: 3.34071
    Positive: Positive_clone: R05G6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (16)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene