WormBase Tree Display for Gene: WBGene00012343
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WBGene00012343 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | casc-3 | |||||||
Sequence_name | W08E3.2 | ||||||||
Molecular_name | W08E3.2 | ||||||||
W08E3.2.1 | |||||||||
CE26028 | |||||||||
Other_name | CELE_W08E3.2 | Accession_evidence | NDB | BX284601 | |||||
Public_name | casc-3 | ||||||||
DB_info | Database | AceView | gene | 1N926 | |||||
WormQTL | gene | WBGene00012343 | |||||||
WormFlux | gene | WBGene00012343 | |||||||
NDB | locus_tag | CELE_W08E3.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00012343|UniProtKB=G5EDE4 | |||||||
family | PTHR13434 | ||||||||
NCBI | gene | 173203 | |||||||
RefSeq | protein | NM_060945.7 | |||||||
TREEFAM | TREEFAM_ID | TF316125 | |||||||
TrEMBL | UniProtAcc | G5EDE4 | |||||||
UniProt_GCRP | UniProtAcc | G5EDE4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 17 Mar 2020 17:45:48 | WBPerson1983 | Name_change | CGC_name | casc-3 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | casc | ||||||||
Allele (50) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (25) | |||||||||
Structured_description | Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in RNA metabolic process; mRNA transport; and regulation of translation. Predicted to be located in cell projection; nuclear speck; and perinuclear region of cytoplasm. Predicted to be part of exon-exon junction complex. Expressed widely. Is an ortholog of human CASC3 (CASC3 exon junction complex subunit). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | W08E3.2 | |||||||
Corresponding_CDS_history | W08E3.2:wp20 | ||||||||
Corresponding_transcript | W08E3.2.1 | ||||||||
Other_sequence (17) | |||||||||
Associated_feature | WBsf220495 | ||||||||
WBsf220496 | |||||||||
WBsf220497 | |||||||||
Experimental_info | RNAi_result | WBRNAi00035141 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00054991 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00116992 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00000338 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00054992 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00004128 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00019724 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr2053 | ||||||||
Expr1014722 | |||||||||
Expr1035463 | |||||||||
Expr1158524 | |||||||||
Expr2006860 | |||||||||
Expr2025085 | |||||||||
Drives_construct | WBCnstr00029986 | ||||||||
Construct_product | WBCnstr00029986 | ||||||||
Microarray_results | SMD_T04D3.7 | ||||||||
SMD_W08E3.2 | |||||||||
173673_s_at | |||||||||
A_12_P114318 | |||||||||
Aff_T04D3.7 | |||||||||
Aff_W08E3.2 | |||||||||
GPL13394_WBGene00012343 | |||||||||
GPL13914_W08E3.2 | |||||||||
GPL14144_W08E3.2_1225-1284_0.931_8_B | |||||||||
GPL14144_W08E3.2_1708-1767_0.921_10_C | |||||||||
GPL14144_W08E3.2_247-306_0.842_39_A | |||||||||
GPL19516_CGZ0038808 | |||||||||
GPL21109_W08E3.2 | |||||||||
GPL3518_CE26028 | |||||||||
GPL8304_CE_WBGene00012343_A | |||||||||
GPL8673_W08E3_2P00382 | |||||||||
GPL8673_W08E3_2P00883 | |||||||||
GPL8673_W08E3_2P01246 | |||||||||
GPL9450_W08E3.2 | |||||||||
cea2.c.06861 | |||||||||
Expression_cluster (112) | |||||||||
Interaction (53) | |||||||||
Map_info | Positive | Positive_clone | W08E3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | I | 18.0459 | |||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00064339 | |||||||||
Method | Gene |