WormBase Tree Display for Gene: WBGene00015497
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| WBGene00015497 | Evidence | Paper_evidence | WBPaper00003754 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_IV | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | nhr-76 | Person_evidence | WBPerson573 | |||||
| Sequence_name | C05G6.1 | ||||||||
| Molecular_name | C05G6.1 | ||||||||
| C05G6.1.1 | |||||||||
| CE37476 | |||||||||
| Other_name | CELE_C05G6.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nhr-76 | ||||||||
| DB_info | Database | AceView | gene | 4B385 | |||||
| WormQTL | gene | WBGene00015497 | |||||||
| WormFlux | gene | WBGene00015497 | |||||||
| NDB | locus_tag | CELE_C05G6.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00015497|UniProtKB=Q65CM0 | |||||||
| family | PTHR24083 | ||||||||
| NCBI | gene | 182276 | |||||||
| RefSeq | protein | NM_067560.6 | |||||||
| SwissProt | UniProtAcc | Q65CM0 | |||||||
| TREEFAM | TREEFAM_ID | TF317760 | |||||||
| UniProt_GCRP | UniProtAcc | Q65CM0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Nov 2004 16:48:19 | WBPerson2970 | Event | Acquires_merge | WBGene00003666 | ||||
| Acquires_merge | WBGene00003666 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nhr | ||||||||
| Laboratory | PY | ||||||||
| Allele (158) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (34) | |||||||||
| Paralog (250) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Involved in positive regulation of fatty acid beta-oxidation by octopamine signaling pathway; positive regulation of fatty acid beta-oxidation by serotonin receptor signaling pathway; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in several structures, including body wall musculature; excretory gland cell; intestine; pharynx; and vulval muscle. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C05G6.1 | |||||||
| Corresponding_CDS_history | C05G6.1:wp102 | ||||||||
| C05G6.1:wp131 | |||||||||
| Corresponding_transcript | C05G6.1.1 | ||||||||
| Other_sequence | GO250325.1 | ||||||||
| CJC14094_1 | |||||||||
| Associated_feature (15) | |||||||||
| Gene_product_binds (288) | |||||||||
| Transcription_factor | WBTranscriptionFactor000610 | ||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr1183 | ||||||||
| Expr11341 | |||||||||
| Expr1015484 | |||||||||
| Expr1036630 | |||||||||
| Expr1143885 | |||||||||
| Expr1200056 | |||||||||
| Expr2014227 | |||||||||
| Expr2032468 | |||||||||
| Drives_construct | WBCnstr00010135 | ||||||||
| WBCnstr00018784 | |||||||||
| WBCnstr00028801 | |||||||||
| Construct_product | WBCnstr00010135 | ||||||||
| WBCnstr00016707 | |||||||||
| WBCnstr00028801 | |||||||||
| Microarray_results | SMD_C05G6.1 | ||||||||
| SMD_C05G6.2 | |||||||||
| 182867_at | |||||||||
| 192270_at | |||||||||
| A_12_P118876 | |||||||||
| A_12_P119866 | |||||||||
| Aff_C05G6.1 | |||||||||
| Aff_C05G6.2 | |||||||||
| GPL13394_WBGene00015497 | |||||||||
| GPL13914_C05G6.1 | |||||||||
| GPL14144_C05G6.1_1139-1198_0.908_6_C | |||||||||
| GPL14144_C05G6.1_1406-1465_0.960_1_A | |||||||||
| GPL14144_C05G6.1_888-947_0.912_4_B | |||||||||
| GPL19516_CGZ0002697 | |||||||||
| GPL21109_C05G6.1 | |||||||||
| GPL3518_CE16828 | |||||||||
| GPL3518_CE16829 | |||||||||
| GPL8304_CE_WBGene00015497_A | |||||||||
| GPL8304_CE_WBGene00015497_B | |||||||||
| GPL8673_C05G6_1P00042 | |||||||||
| GPL8673_C05G6_1P00558 | |||||||||
| GPL8673_C05G6_1P01192 | |||||||||
| GPL9450_C05G6.2 | |||||||||
| cea2.i.23274 | |||||||||
| Expression_cluster (134) | |||||||||
| Interaction (36) | |||||||||
| Map_info | Map | IV | Position | -23.7312 | Error | 0.06052 | |||
| Positive | Positive_clone | C05G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point (2) | ||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00028802 | |||||||||
| WBPaper00044293 | |||||||||
| WBPaper00051774 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00062388 | |||||||||
| WBPaper00064415 | |||||||||
| WBPaper00064719 | |||||||||
| WBPaper00065847 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
