WormBase Tree Display for Gene: WBGene00019407
expand all nodes | collapse all nodes | view schema
WBGene00019407 | SMap | S_parent | Sequence | K05F1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | lect-2 | Person_evidence | WBPerson1705 | |||||
WBPerson1781 | |||||||||
Sequence_name | K05F1.5 | ||||||||
Molecular_name | K05F1.5 | ||||||||
K05F1.5.1 | |||||||||
CE51789 | |||||||||
Other_name | CELE_K05F1.5 | Accession_evidence | NDB | BX284602 | |||||
Public_name | lect-2 | ||||||||
DB_info | Database | AceView | gene | 2G83 | |||||
WormQTL | gene | WBGene00019407 | |||||||
WormFlux | gene | WBGene00019407 | |||||||
NDB | locus_tag | CELE_K05F1.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00019407|UniProtKB=Q21241 | |||||||
family | PTHR11329 | ||||||||
NCBI | gene | 173978 | |||||||
RefSeq | protein | NM_062740.8 | |||||||
SwissProt | UniProtAcc | Q21241 | |||||||
TREEFAM | TREEFAM_ID | TF331097 | |||||||
UniProt_GCRP | UniProtAcc | Q21241 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 13 Jul 2016 14:54:16 | WBPerson2970 | Name_change | CGC_name | lect-2 | ||||
3 | 31 Aug 2016 12:09:51 | WBPerson1983 | Event | Split_into | WBGene00270309 | ||||
Split_into | WBGene00270309 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lect | ||||||||
Allele (63) | |||||||||
Strain | WBStrain00032667 | ||||||||
WBStrain00030278 | |||||||||
WBStrain00030280 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (23) | |||||||||
Ortholog (37) | |||||||||
Paralog | WBGene00270309 | Caenorhabditis elegans | From_analysis | Panther | |||||
Structured_description | Automated_description | Predicted to enable metal ion binding activity. Involved in innervation; regulation of dendrite extension; and regulation of dendrite morphogenesis. Located in basement membrane; cell surface; and somatodendritic compartment. Expressed in body wall musculature; coelomocyte; head neurons; and ventral cord neurons. Human ortholog(s) of this gene implicated in hepatocellular carcinoma and lung adenocarcinoma. Is an ortholog of human LECT2 (leukocyte cell derived chemotaxin 2). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:3910 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6550) | ||||
DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6550) | ||||||
Molecular_info | Corresponding_CDS | K05F1.5 | |||||||
Corresponding_CDS_history | K05F1.5:wp255 | ||||||||
Corresponding_transcript | K05F1.5.1 | ||||||||
Other_sequence (49) | |||||||||
Associated_feature | WBsf657624 | ||||||||
WBsf657625 | |||||||||
WBsf657626 | |||||||||
WBsf987962 | |||||||||
WBsf221342 | |||||||||
Transcription_factor | WBTranscriptionFactor000903 | ||||||||
Experimental_info | RNAi_result | WBRNAi00016629 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076545 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00081156 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00016630 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049991 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049992 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr13005 | ||||||||
Expr13006 | |||||||||
Expr13152 | |||||||||
Expr13153 | |||||||||
Expr1021828 | |||||||||
Expr1038381 | |||||||||
Expr1153686 | |||||||||
Expr1200321 | |||||||||
Expr2013043 | |||||||||
Expr2031275 | |||||||||
Drives_construct | WBCnstr00025860 | ||||||||
WBCnstr00038191 | |||||||||
WBCnstr00038390 | |||||||||
Construct_product | WBCnstr00021928 | ||||||||
WBCnstr00025860 | |||||||||
WBCnstr00038191 | |||||||||
Microarray_results | SMD_K05F1.4 | ||||||||
SMD_K05F1.5 | |||||||||
175584_s_at | |||||||||
182306_at | |||||||||
183961_at | |||||||||
A_12_P115361 | |||||||||
Aff_K05F1.4 | |||||||||
Aff_K05F1.5 | |||||||||
GPL13394_WBGene00019407 | |||||||||
GPL13914_K05F1.5 | |||||||||
GPL14144_K05F1.5_1078-1137_0.933_2_B | |||||||||
GPL14144_K05F1.5_1143-1202_0.930_4_C | |||||||||
GPL14144_K05F1.5_1372-1431_0.952_1_A | |||||||||
GPL19516_CGZ0027935 | |||||||||
GPL21109_K05F1.5 | |||||||||
GPL3518_CE28587 | |||||||||
GPL8304_CE_WBGene00019407_A | |||||||||
GPL8304_CE_WBGene00019407_B | |||||||||
GPL8304_CE_WBGene00019407_C | |||||||||
GPL8673_K05F1_5P00509 | |||||||||
GPL8673_K05F1_5P00702 | |||||||||
GPL8673_K05F1_5P01115 | |||||||||
GPL9450_K05F1.5 | |||||||||
cea2.p.42411 | |||||||||
Expression_cluster (153) | |||||||||
Interaction (11) | |||||||||
Map_info | Map | II | Position | -0.930501 | |||||
Positive | Positive_clone | K05F1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |