WormBase Tree Display for Gene: WBGene00019434
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WBGene00019434 | SMap | S_parent | Sequence | K06A5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | nmtn-1 | Paper_evidence | WBPaper00041006 | |||||
Sequence_name | K06A5.8 | ||||||||
Molecular_name (11) | |||||||||
Other_name | CELE_K06A5.8 | Accession_evidence | NDB | BX284601 | |||||
Public_name | nmtn-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 27 Apr 2012 17:06:28 | WBPerson2970 | Name_change | CGC_name | nmtn-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nmtn | ||||||||
Allele (175) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (37) | |||||||||
Structured_description | Automated_description | Enriched in several structures, including ABalaapppa; ABalapaaaa; ABalapaapa; germ line; and neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including skn-1; glp-1; and rrf-3 based on microarray and RNA-seq studies. Is affected by eleven chemicals including Alovudine; stavudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: WD domain, G-beta repeat; WD repeat-containing protein 47; WD40-repeat-containing domain superfamily; WD40/YVTN repeat-like-containing domain superfamily; and WD40 repeat. Is an ortholog of human WDR47 (WD repeat domain 47). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | K06A5.8a | |||||||
K06A5.8b | |||||||||
K06A5.8d | |||||||||
Corresponding_CDS_history | K06A5.8c:wp145 | ||||||||
Corresponding_transcript | K06A5.8a.1 | ||||||||
K06A5.8b.1 | |||||||||
K06A5.8b.2 | |||||||||
K06A5.8d.1 | |||||||||
K06A5.8d.2 | |||||||||
Other_sequence (24) | |||||||||
Associated_feature | WBsf649239 | ||||||||
WBsf649240 | |||||||||
WBsf664338 | |||||||||
WBsf664339 | |||||||||
WBsf664340 | |||||||||
WBsf983947 | |||||||||
WBsf1009961 | |||||||||
WBsf1009962 | |||||||||
WBsf219593 | |||||||||
Experimental_info | RNAi_result (13) | ||||||||
Expr_pattern | Expr1011513 | ||||||||
Expr1038398 | |||||||||
Expr1153727 | |||||||||
Expr2014336 | |||||||||
Expr2032577 | |||||||||
Microarray_results | SMD_C55B7.7 | ||||||||
SMD_K06A5.8 | |||||||||
175539_s_at | |||||||||
176749_at | |||||||||
176750_s_at | |||||||||
180179_at | |||||||||
A_12_P105107 | |||||||||
A_12_P109667 | |||||||||
A_12_P115418 | |||||||||
Aff_C55B7.7 | |||||||||
Aff_K06A5.8 | |||||||||
GPL13394_WBGene00019434 | |||||||||
GPL13914_K06A5.8 | |||||||||
GPL14144_K06A5.8b_1342-1401_0.832_87_C | |||||||||
GPL14144_K06A5.8b_2417-2476_0.944_1_B | |||||||||
GPL14144_K06A5.8b_2715-2774_0.839_77_A | |||||||||
GPL19516_CGZ0028000 | |||||||||
GPL19516_CGZ0028001 | |||||||||
GPL19516_CGZ0028002 | |||||||||
GPL19516_CGZ0028003 | |||||||||
GPL19516_CGZ0028004 | |||||||||
GPL21109_K06A5.8a.1 | |||||||||
GPL21109_K06A5.8b.1 | |||||||||
GPL21109_K06A5.8d | |||||||||
GPL3518_CE31355 | |||||||||
GPL3518_CE31356 | |||||||||
GPL8304_CE_WBGene00019434_A | |||||||||
GPL8673_K06A5_8aP01291 | |||||||||
GPL8673_K06A5_8aP01811 | |||||||||
GPL8673_K06A5_8aP02369 | |||||||||
GPL8673_K06A5_8bP02566 | |||||||||
GPL8673_K06A5_8bP02635 | |||||||||
GPL8673_K06A5_8bP02770 | |||||||||
GPL8673_K06A5_8dP00493 | |||||||||
GPL8673_K06A5_8dP01013 | |||||||||
GPL8673_K06A5_8dP01573 | |||||||||
GPL9450_K06A5.8a | |||||||||
GPL9450_K06A5.8c | |||||||||
cea2.d.32379 | |||||||||
cea2.d.32404 | |||||||||
Expression_cluster (168) | |||||||||
Interaction (18) | |||||||||
Map_info | Map | I | Position | 1.14897 | |||||
Positive | Positive_clone | K06A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00041006 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00064720 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |