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WormBase Tree Display for Gene: WBGene00000229

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Name Class

WBGene00000229SMapS_parentSequenceC34E10
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classatp
Allele (29)
StrainWBStrain00006141
WBStrain00001205
WBStrain00024104
WBStrain00024105
WBStrain00037206
RNASeq_FPKM (74)
GO_annotation (53)
Contained_in_operonCEOP3268
OrthologWBGene00069185Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00040018Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00135466Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00190940Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00234096Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g5244Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g15305Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g6718Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19765Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3708Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g20830Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12162Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g19686Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g3113Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7842Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_18486.g25976Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-atp-2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g12543Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01581.g21871Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06175Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_008464Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04981Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g5501Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_30024720Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g7670Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00245436Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00272447Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00262779Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00290827Trichuris murisFrom_analysisWormBase-Compara
SGD:S000003882Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0010217Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-124Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:830Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:107801Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:621368Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00004959Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006921Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00010419Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012040Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00013025Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionatp-2 encodes the beta subunit of the soluble, catalytic F1 portion of ATP synthase (mitochondrial respiratory chain [MRC] complex V); atp-2 activity is required for embryonic and larval development past the L3 stage, as well as for normal mobility, pharyngeal pumping, defecation, growth rate, and larval lifespan; in males, atp-2 activity is also required cell autonomously in male-specific sensory neurons for response to hermaphrodite contact, the first step in a series of stereotypical male mating behaviors; in vitro, the N-terminus of ATP-2 interacts directly with the conserved PLAT domains of human polycystin (PC)-1 and C. elegans LOV-1, which is expressed exclusively in adult male sensory neurons and is also required for the response to hermaphrodite contact; atp-2 is widely expressed throughout development in both sexes; ATP-2 localizes to mitochondria and to cilia of male-specific neurons; in the male-specific CEM neurons ATP-2 colocalizes with PKD-2, the C. elegans homolog of human polycystin (PC)-2.Paper_evidenceWBPaper00004403
WBPaper00004813
WBPaper00024944
Curator_confirmedWBPerson48
WBPerson1843
Date_last_updated16 Jan 2007 00:00:00
Automated_descriptionEnables protein domain specific binding activity. Involved in several processes, including determination of adult lifespan; inductive cell migration; and pharyngeal pumping. Located in mitochondrion and non-motile cilium. Expressed in HOB; head; ray neuron type B; and tail. Is an ortholog of human ATP5F1B (ATP synthase F1 subunit beta).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_info (4)
Experimental_info (11)
Map_infoMapIIIPosition-1.91727Error0.020951
PositivePositive_cloneC34E10Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4167
4513
Pseudo_map_position
Reference (48)
RemarkSequence connection from [Tsang LW, Lemire BD]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene