WormBase Tree Display for Gene: WBGene00000508

WBGene00000508 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: F44B9
  Identity: Version: 1
    Name: CGC_name: cit-1.2
      Sequence_name: F44B9.3
      Molecular_name: F44B9.3a
        F44B9.3a.1
        CE29042
        F44B9.3b
        CE32417
        F44B9.3b.1
        F44B9.3b.2
      Other_name: CELE_F44B9.3 Accession_evidence: NDB BX284603
      Public_name: cit-1.2
    DB_info: Database: AceView gene 3J103
        WormQTL gene WBGene00000508
        WormFlux gene WBGene00000508
        NDB locus_tag CELE_F44B9.3
        Panther gene CAEEL|WormBase=WBGene00000508|UniProtKB=P34424
          family PTHR10026
        NCBI gene 176126
        RefSeq protein NM_066344.6
            NM_001382929.1
        SwissProt UniProtAcc P34424
        TREEFAM TREEFAM_ID TF101014
        UniProt_GCRP UniProtAcc P34424
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:21 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cit
    Allele (36)
    Strain: WBStrain00002223
      WBStrain00035784
    In_cluster: conserved_miRNA_siRNA_cluster
    RNASeq_FPKM (74)
    GO_annotation: 00042247
      00042248
      00042249
      00042250
      00042251
      00042252
      00042253
      00042254
      00107505
      00107506
    Ortholog: WBGene00064512 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00041404 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00161951 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00129715 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
      WBGene00224340 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g4038 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2262 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g9510 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8524 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g122 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g16718 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20931 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13243 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6339 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g985 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g20021 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00039.g2175 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-cit-1.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10536 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_04516.g33122 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_02135 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_008236 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12985 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_30180200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8285 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246422 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00098043 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00281498 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00261936 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290396 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003543 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
      FB:FBgn0025455 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-183 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-030131-5779 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-6397 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:1599 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:1600 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1328363 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
      MGI:1920199 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1309205 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1311151 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
    Paralog: WBGene00000506 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000507 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000876 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00021714 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00009650 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: cit-1.2 encodes one of two C. elegans cyclin T orthologs; RNAi experiments indicate that CIT-1.2 functions redundantly with CIT-1.1 to broadly regulate embryonic transcription; by homology, CIT-1.1 and CIT-1.2 are predicted to interact with the CDK-9 kinase to form the P-TEFb transcription elongation factor that in C. elegans is required for Ser2, but not Ser5, phosphorylation in the C-terminal domain (CTD) repeat of AMA-1/PolII. Paper_evidence: WBPaper00005411
          Curator_confirmed: WBPerson1843
          Date_last_updated: 27 May 2005 00:00:00
      Automated_description: Enables cyclin-dependent protein serine/threonine kinase activator activity. Involved in embryo development. Located in nucleus. Expressed in several structures, including head. Is an ortholog of human CCNT1 (cyclin T1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F44B9.3a
      F44B9.3b
    Corresponding_transcript: F44B9.3a.1
      F44B9.3b.1
      F44B9.3b.2
    Other_sequence: CR07496
      CRC04081_1
      CRC03822_1
      CR05193
      CR05367
    Associated_feature: WBsf645379
      WBsf659221
      WBsf981517
      WBsf993218
      WBsf225326
      WBsf225327
  Experimental_info: RNAi_result (18)
    Expr_pattern: Expr6068
      Expr11662
      Expr1018895
      Expr1030301
      Expr1151106
      Expr2010023
      Expr2028264
    Drives_construct: WBCnstr00002960
      WBCnstr00037490
    Construct_product: WBCnstr00019158
      WBCnstr00019159
      WBCnstr00019279
      WBCnstr00037490
    Microarray_results (32)
    Expression_cluster (86)
    Interaction (54)
  Map_info: Map: III Position: -0.448098 Error: 0.000664
    Positive: Positive_clone: F44B9 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4220
        4910
    Pseudo_map_position
  Reference: WBPaper00005411
    WBPaper00029038
    WBPaper00031439
    WBPaper00038491
    WBPaper00044000
    WBPaper00055090
  Remark: Sequence connection from [Blackwell K]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene