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WormBase Tree Display for Gene: WBGene00001490

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WBGene00001490	SMap	S_parent	Sequence	CHROMOSOME_X
	Identity	Version	2
		Name	CGC_name	frm-3	Person_evidence	WBPerson204
			Sequence_name	H05G16.1
			Molecular_name	H05G16.1a
				H05G16.1a.1
				CE43269
				H05G16.1b
				CE52019
				H05G16.1c
				CE40652
				H05G16.1a.2
				H05G16.1b.1
				H05G16.1c.1
			Other_name	CELE_H05G16.1	Accession_evidence	NDB	BX284606
			Public_name	frm-3
		DB_info	Database	AceView	gene	XM199
				WormQTL	gene	WBGene00001490
				WormFlux	gene	WBGene00001490
				NDB	locus_tag	CELE_H05G16.1
				Panther	gene	CAEEL\|WormBase=WBGene00001490\|UniProtKB=O17905
					family	PTHR45858
				NCBI	gene	186110
				RefSeq	protein	NM_077534.3
						NM_001375142.3
						NM_001351892.5
				TrEMBL	UniProtAcc	A0A1X7RBN3
						G5EDC0
						O17905
				UniProt_GCRP	UniProtAcc	O17905
				OMIM	gene	300628
		Species	Caenorhabditis elegans
		History	Version_change	1	07 Apr 2004 11:29:24	WBPerson1971	Event	Imported	Initial conversion from geneace
				2	28 Apr 2017 01:35:57	WBPerson1983	Event	Acquires_merge	WBGene00009932
			Acquires_merge	WBGene00009932
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	frm
		Allele (173)
		Strain	WBStrain00036481
			WBStrain00023645
		RNASeq_FPKM (74)
		GO_annotation	00002734
			00002735
			00002736
			00030973
			00030974
			00030975
			00030976
			00030977
			00108786
			00108787
		Ortholog	WBGene00058262	Caenorhabditis remanei	From_analysis	TreeFam
						Inparanoid_8
						WormBase-Compara
			WBGene00036967	Caenorhabditis briggsae	From_analysis	Hillier-set
						OrthoMCL
						Inparanoid_8
						WormBase-Compara
			WBGene00163432	Caenorhabditis brenneri	From_analysis	TreeFam
						Inparanoid_8
						WormBase-Compara
			WBGene00135425	Caenorhabditis japonica	From_analysis	TreeFam
						Inparanoid_8
						WormBase-Compara
			WBGene00058261	Caenorhabditis remanei	From_analysis	OMA
						TreeFam
						Inparanoid_8
			WBGene00152632	Caenorhabditis brenneri	From_analysis	OMA
						TreeFam
						Inparanoid_8
			WBGene00137381	Caenorhabditis japonica	From_analysis	TreeFam
						Inparanoid_8
			WBGene00102719	Pristionchus pacificus	From_analysis	OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00224883	Brugia malayi	From_analysis	WormBase-Compara
			CBOVI.g11868	Caenorhabditis bovis	From_analysis	WormBase-Compara
			CSP21.g9597	Caenorhabditis parvicauda	From_analysis	WormBase-Compara
			CSP28.g18793	Caenorhabditis panamensis	From_analysis	WormBase-Compara
			CSP29.g15797	Caenorhabditis becei	From_analysis	WormBase-Compara
			CSP31.g10032	Caenorhabditis uteleia	From_analysis	WormBase-Compara
			CSP32.g2884	Caenorhabditis sulstoni	From_analysis	WormBase-Compara
			CSP38.g5471	Caenorhabditis quiockensis	From_analysis	WormBase-Compara
			Cang_2012_03_13_00054.g2813	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cni-frm-3	Caenorhabditis nigoni	From_analysis	WormBase-Compara
			Csp11.Scaffold553.g3663	Caenorhabditis tropicalis	From_analysis	WormBase-Compara
			Csp5_scaffold_00026.g1501	Caenorhabditis sinica	From_analysis	WormBase-Compara
			FL83_01100	Caenorhabditis latens	From_analysis	WormBase-Compara
			OTIPU.nOt.2.0.1.g01278	Oscheius tipulae	From_analysis	WormBase-Compara
			Pan_g13501	Panagrellus redivivus	From_analysis	WormBase-Compara
			WBGene00239236	Onchocerca volvulus	From_analysis	WormBase-Compara
			WBGene00257883	Strongyloides ratti	From_analysis	WormBase-Compara
			WBGene00300035	Trichuris muris	From_analysis	WormBase-Compara
			WBGene00301590	Trichuris muris	From_analysis	WormBase-Compara
			FB:FBgn0265082	Drosophila melanogaster	From_analysis	OrthoFinder
						OrthoInspector
						Panther
						PhylomeDB
			ZFIN:ZDB-GENE-030131-2993	Danio rerio	From_analysis	EnsEMBL-Compara
						OrthoInspector
						Panther
						SonicParanoid
			ZFIN:ZDB-GENE-070424-163	Danio rerio	From_analysis	EnsEMBL-Compara
						OrthoInspector
						Panther
						SonicParanoid
			HGNC:16460	Homo sapiens	From_analysis	EnsEMBL-Compara
						Inparanoid
						OrthoInspector
						Panther
						PhylomeDB
						SonicParanoid
			HGNC:3591	Homo sapiens	From_analysis	EnsEMBL-Compara
						Inparanoid
						OrthoInspector
						Panther
						SonicParanoid
			HGNC:8079	Homo sapiens	From_analysis	EnsEMBL-Compara
						OrthoInspector
						Panther
						PhylomeDB
			MGI:2446173	Mus musculus	From_analysis	EnsEMBL-Compara
						OrthoInspector
						Panther
						PhylomeDB
						SonicParanoid
			MGI:2385126	Mus musculus	From_analysis	EnsEMBL-Compara
						OrthoInspector
						Panther
						SonicParanoid
			MGI:2686379	Mus musculus	From_analysis	EnsEMBL-Compara
						OrthoInspector
						Panther
						PhylomeDB
			RGD:1562057	Rattus norvegicus	From_analysis	EnsEMBL-Compara
						OrthoInspector
						Panther
			RGD:1305346	Rattus norvegicus	From_analysis	EnsEMBL-Compara
						OrthoInspector
						Panther
						PhylomeDB
						SonicParanoid
			RGD:1308003	Rattus norvegicus	From_analysis	EnsEMBL-Compara
						OrthoInspector
						Panther
						PhylomeDB
						SonicParanoid
		Paralog	WBGene00001366	Caenorhabditis elegans	From_analysis	WormBase-Compara
			WBGene00006431	Caenorhabditis elegans	From_analysis	WormBase-Compara
			WBGene00006450	Caenorhabditis elegans	From_analysis	WormBase-Compara
			WBGene00013682	Caenorhabditis elegans	From_analysis	WormBase-Compara
		Structured_description	Automated_description	Enables GABA receptor binding activity. Involved in gamma-aminobutyric acid receptor clustering. Predicted to be located in adherens junction and plasma membrane. Expressed in dorsal nerve cord. Human ortholog(s) of this gene implicated in congenital nystagmus 1. Is an ortholog of human FARP2 (FERM, ARH/RhoGEF and pleckstrin domain protein 2).	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS291 version of WormBase
					Date_last_updated	29 Nov 2023 00:00:00
	Disease_info	Potential_model	DOID:0111790	Homo sapiens	Inferred_automatically	Inferred by orthology to human genes with DO annotation (HGNC:8079)
	Molecular_info	Corresponding_CDS	H05G16.1a
			H05G16.1b
			H05G16.1c
		Corresponding_CDS_history	H05G16.1:wp196
		Corresponding_transcript	H05G16.1a.1
			H05G16.1a.2
			H05G16.1b.1
			H05G16.1c.1
		Other_sequence (11)
		Associated_feature	WBsf663372
			WBsf663373
			WBsf1007045
			WBsf1007046
			WBsf1007047
			WBsf1007048
			WBsf1023897
			WBsf1023898
			WBsf1023899
	Experimental_info	RNAi_result	WBRNAi00016198	Inferred_automatically	RNAi_primary
			WBRNAi00047966	Inferred_automatically	RNAi_primary
			WBRNAi00077329	Inferred_automatically	RNAi_primary
			WBRNAi00015399	Inferred_automatically	RNAi_primary
			WBRNAi00049303	Inferred_automatically	RNAi_primary
			WBRNAi00032609	Inferred_automatically	RNAi_primary
			WBRNAi00114828	Inferred_automatically	RNAi_primary
			WBRNAi00033665	Inferred_automatically	RNAi_primary
		Expr_pattern (12)
		Drives_construct	WBCnstr00013168
			WBCnstr00022289
			WBCnstr00031805
			WBCnstr00036913
		Construct_product	WBCnstr00013168
			WBCnstr00021429
			WBCnstr00021430
			WBCnstr00031805
			WBCnstr00036913
			WBCnstr00041671
		Microarray_results (44)
		Expression_cluster (183)
		Interaction (15)
	Map_info	Map	X	Position	4.71117	Error	0.036864
		Positive	Positive_clone	H05G16	Inferred_automatically	From CDS info
						From sequence, transcript, pseudogene data
		Mapping_data	Multi_point	5432
				5040
		Pseudo_map_position
	Reference (11)
	Remark	data submitted by [Gobel V]
		Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.	CGC_data_submission
	Method	Gene