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WormBase Tree Display for Gene: WBGene00001980

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Name Class

WBGene00001980SMapS_parentSequenceCHROMOSOME_I
IdentityVersion1
NameCGC_namehmr-1Person_evidenceWBPerson498
Sequence_nameW02B9.1
Molecular_name (13)
Other_nameCELE_W02B9.1Accession_evidenceNDBBX284601
Public_namehmr-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:26WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhmr
Allele (936)
StrainWBStrain00033419
WBStrain00024209
WBStrain00024233
WBStrain00034583
WBStrain00037750
WBStrain00022481
WBStrain00022484
RNASeq_FPKM (74)
GO_annotation (45)
OrthologWBGene00029848Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00142237Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00061255Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00129768Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00158278Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00192851Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00175673Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00303376Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00226383Brugia malayiFrom_analysisWormBase-Compara
WBGene00226384Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9987Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g13783Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g10209Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g10210Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g21145Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g14561Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g4305Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21140Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g17932Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g24335Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g30012Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4455Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g4456Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00043.g2369Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_18381.g25952Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_I.g3604Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_I.g3605Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17396Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_07101.g37373Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17967Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_17968Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_003489Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g8725Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10033310Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_10033320Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g2193Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00237062Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00258934Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00295328Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0015609Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
FB:FBgn0262018Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-130530-842Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-100922-84Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ParalogWBGene00001475Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017576Caenorhabditis elegansFrom_analysisPanther
WBGene00022103Caenorhabditis elegansFrom_analysisPanther
WBGene00014914Caenorhabditis elegansFrom_analysismodENCODE_Pseudogenes
WormBase-Compara
Structured_descriptionConcise_descriptionhmr-1 encodes two isoforms of a classical cadherin that contain extracellular cadherin, EGF-like, and laminin G domains as well as a highly conserved intracellular domain that binds beta-catenin; by homology, the HMR-1 proteins are predicted to function as calcium-dependent, homophilic cell-cell adhesion receptors; in vivo, HMR-1A activity is required for mediating the cell migrations, cell shape changes, and presumably actin cytoskeleton rearrangements that occur during embryonic tissue and body morphogenesis; HMR-1B is required for fasciculation and outgrowth of a subset of motor neuron processes; HMR-1 antibodies detect expression in all embryonic blastomeres at early stages of development but as hypodermal adherens junctions form and morphogenesis begins, HMR-1 becomes highly expressed in the apical junctions of all hypodermal cells; later, HMR-1 is expressed primarily at the apical margins of hypodermal, pharyngeal, and intestinal cells in a pattern consistent with localization to adherens junctions; an HMR-1B reporter fusion is expressed in neurons, including the DD, VD, and AS class of motor neurons; HMR-1 activity is required for proper localization of other junctional components, such as HMP-1/alpha-catenin and HMP-2/beta-catenin, but not for localization of AJM-1, the junctional component recognized by the MH27 antibody.Paper_evidenceWBPaper00003046
WBPaper00005031
WBPaper00013424
WBPaper00040399
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated16 Nov 2011 00:00:00
Automated_descriptionEnables beta-catenin binding activity and delta-catenin binding activity. Involved in cytoskeleton organization; embryo development; and gastrulation. Located in adherens junction; distal dendrite; and plasma membrane. Part of catenin complex. Expressed in several structures, including germline precursor cell; hypodermis; motor neurons; nerve ring; and neuroblasts.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSW02B9.1a
W02B9.1b
W02B9.1d
W02B9.1e
Corresponding_CDS_historyW02B9.1a:wp229
W02B9.1c:wp274
Corresponding_transcriptW02B9.1a.1
W02B9.1a.2
W02B9.1b.1
W02B9.1d.1
W02B9.1e.1
Other_sequence (52)
Associated_feature (71)
Experimental_info (9)
Map_infoMapIPosition6.60962Error0.05706
PositivePositive_cloneW02B9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4410
4851
4818
5481
Pseudo_map_position
Reference (111)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene