WormBase Tree Display for Gene: WBGene00002235
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WBGene00002235 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y54G9A | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | kqt-3 | Person_evidence | WBPerson655 | |||||
Sequence_name | Y54G9A.3 | ||||||||
Molecular_name | Y54G9A.3a | ||||||||
Y54G9A.3a.1 | |||||||||
CE32760 | |||||||||
Y54G9A.3b | |||||||||
CE43414 | |||||||||
Y54G9A.3c | |||||||||
CE43403 | |||||||||
Y54G9A.3a.2 | |||||||||
Y54G9A.3b.1 | |||||||||
Y54G9A.3c.1 | |||||||||
Other_name | CELE_Y54G9A.3 | Accession_evidence | NDB | BX284602 | |||||
Public_name | kqt-3 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:27 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | kqt | ||||||||
Allele (544) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (20) | |||||||||
Ortholog | WBGene00057574 | Caenorhabditis remanei | From_analysis | OMA | |||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00039660 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00151695 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00157444 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00128316 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00164558 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
WBGene00051464 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
WBGene00122083 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
CBOVI.g12607 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g12088 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP21.g3988 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g11618 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g1514 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g17275 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g20474 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g3270 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g3723 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g15524 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP39.g6181 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g5543 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_00111.g4648 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_11684.g23375 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cni-kqt-3 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold586.g4894 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00783.g15430 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_06845 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_005808 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
OTIPU.nOt.2.0.1.g09354 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
Pan_g9388 | Panagrellus redivivus | From_analysis | WormBase-Compara | ||||||
Sp34_20073600 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrII_pilon.g6405 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00117811 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00266617 | Strongyloides ratti | From_analysis | WormBase-Compara | ||||||
WBGene00285243 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
ZFIN:ZDB-GENE-061214-5 | Danio rerio | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
ZFIN:ZDB-GENE-130530-935 | Danio rerio | From_analysis | Hieranoid | ||||||
OrthoFinder | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
HGNC:6294 | Homo sapiens | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
MGI:108083 | Mus musculus | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
RGD:621503 | Rattus norvegicus | From_analysis | EnsEMBL-Compara | ||||||
Hieranoid | |||||||||
Inparanoid | |||||||||
OMA | |||||||||
OrthoFinder | |||||||||
OrthoInspector | |||||||||
Panther | |||||||||
PhylomeDB | |||||||||
SonicParanoid | |||||||||
Paralog (13) | |||||||||
Structured_description | Concise_description | kqt-3 encodes one of three C. elegans KCNQ-like potassium channel subunits and, with respect to humans, is most similar to the KCNQ1 channel protein which when mutated leads to inherited long QT syndrome (OMIM:607542); although loss of KQT-3 activity via large-scale RNAi screens results in no obvious abnormalities, KQT-3 likely functions to regulate cellular excitability as expression of KQT-3 in Xenopus oocytes can produce K+ channel currents that functionally resemble vertebrate M-currents; activity of these KQT-3 channels can be suppressed by coexpression with the human M1 muscarinic receptor and treatment with diacylglycerol analogs, although KQT-3 is less sensitive to each of these treatments than KQT-1; a KQT-3::GFP fusion protein is expressed in the anterior- and posterior-most intestinal cells, the anterior and posterior mechanosensory neurons ALM and PLM, amphid and phasmid neurons, and in some additional head neurons. | Paper_evidence | WBPaper00004103 | |||||
WBPaper00025059 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson567 | |||||||||
Date_last_updated | 10 May 2007 00:00:00 | ||||||||
Automated_description | Enables potassium channel activity. Involved in G protein-coupled acetylcholine receptor signaling pathway and potassium ion transport. Predicted to be located in plasma membrane and synapse. Predicted to be part of voltage-gated potassium channel complex. Expressed in head neurons; intestine; and sensory neurons. Used to study Jervell-Lange Nielsen syndrome. Human ortholog(s) of this gene implicated in heart conduction disease (multiple); long QT syndrome (multiple); and seminoma. Is an ortholog of human KCNQ1 (potassium voltage-gated channel subfamily Q member 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Experimental_model | DOID:2842 | Homo sapiens | Paper_evidence | WBPaper00025059 | ||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 03 Oct 2018 00:00:00 | ||||||||
DOID:2843 | Homo sapiens | Paper_evidence | WBPaper00025059 | ||||||
Accession_evidence | OMIM | 192500 | |||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 04 Apr 2013 00:00:00 | ||||||||
Potential_model | DOID:0050793 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6294) | |||||
DOID:2842 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6294) | ||||||
DOID:0050650 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6294) | ||||||
DOID:9352 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6294) | ||||||
DOID:2843 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6294) | ||||||
DOID:0060224 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6294) | ||||||
DOID:0110644 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6294) | ||||||
DOID:4440 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6294) | ||||||
Disease_relevance | The kqt genes in elegans (kqt-1, kqt-2, kqt-3) are most similar to the human KCNQ multi-gene family encoding potassium channels; C. elegans kqt-1 defines a subfamily of potassium channel genes along with the human KCNQ2-5 and kqt-3 is most similar to KCNQ1; mutations in human KCNQ genes have been associated with genetic disorders of cardiac arrhythmia and deafness; mutations in KCNQ1 are associated with Atrial fibrillation (familial 3), Jervell and Lange-Nielen syndrome, Long-QT syndrome-1, and Short QT syndrome-2; studies in elegans show that the suppression of KCNQ/KQTchannels by diacylglycerol (DAG) is dependent on the carboxyl terminal domains of the channel subunits and activated protein kinase C. | Homo sapiens | Paper_evidence | WBPaper00025059 | |||||
Accession_evidence | OMIM | 607554 | |||||||
220400 | |||||||||
192500 | |||||||||
609621 | |||||||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 07 May 2012 00:00:00 | ||||||||
Models_disease_in_annotation | WBDOannot00000064 | ||||||||
WBDOannot00000302 | |||||||||
Molecular_info | Corresponding_CDS | Y54G9A.3a | |||||||
Y54G9A.3b | |||||||||
Y54G9A.3c | |||||||||
Corresponding_CDS_history | Y54G9A.3:wp91 | ||||||||
Corresponding_transcript | Y54G9A.3a.1 | ||||||||
Y54G9A.3a.2 | |||||||||
Y54G9A.3b.1 | |||||||||
Y54G9A.3c.1 | |||||||||
Other_sequence (57) | |||||||||
Associated_feature (13) | |||||||||
Experimental_info | RNAi_result | WBRNAi00057477 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020995 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00088720 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00088613 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00020994 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00037500 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr3236 | ||||||||
Expr1017115 | |||||||||
Expr1031312 | |||||||||
Expr1160921 | |||||||||
Expr2012978 | |||||||||
Expr2031210 | |||||||||
Drives_construct | WBCnstr00011242 | ||||||||
Construct_product | WBCnstr00011242 | ||||||||
WBCnstr00040826 | |||||||||
Microarray_results (23) | |||||||||
Expression_cluster (97) | |||||||||
Interaction (11) | |||||||||
Map_info | Map | II | Position | 19.5801 | Error | 0.102694 | |||
Positive | Positive_clone | Y54G9A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4469 | |||||||
Pseudo_map_position | |||||||||
Reference (19) | |||||||||
Picture | WBPicture0000013535 | ||||||||
Remark | Sequence connection from [Wei A] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |