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WormBase Tree Display for Gene: WBGene00003504

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Name Class

WBGene00003504EvidenceCGC_data_submission
SMapS_parentSequenceZK1098
Identity (6)
Gene_infoBiotypeSO:0001217
Gene_classmut
Allele (46)
StrainWBStrain00003332
WBStrain00028942
WBStrain00028975
WBStrain00034635
WBStrain00040468
In_clusterconserved_miRNA_siRNA_cluster
RNASeq_FPKM (74)
GO_annotation (24)
OrthologWBGene00055075Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00031539Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00143683Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00112188Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00133179Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00230693Brugia malayiFrom_analysisWormBase-Compara
CSP21.g11036Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g13084Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14079Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3252Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25790Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g11112Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g16675Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g29932Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3387Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cni-mut-7Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_00327.g9475Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_07389Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_009454Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10174Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g11209Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_30194200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8642Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00247127Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00291028Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0032924Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-091204-349Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:26023Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00014220Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00013256Caenorhabditis elegansFrom_analysisTreeFam
WBGene00012290Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionConcise_descriptionmut-7 encodes a homolog of RnaseD that represses transposition of Tc1, Tc3, Tc4, and Tc5, perhaps by degrading transposon-specific messages; also affects sperm development, sensitivity to RNAi of mainly germline expressed genes, silencing of some germline transgenes, X chromosome loss, and is required for cosuppression (functional silencing of chromosomal loci induced by transgenes) and for silencing induced by antisense RNA oligomers; cellular fractionation experiments indicate that MUT-7 is expressed in adult worms, and resides in a complex in both the cytosol and nucleus; in the cytosolic complex, MUT-7 interacts with RDE-2, a novel protein also required for RNA interference.Paper_evidenceWBPaper00003711
WBPaper00003722
WBPaper00003956
WBPaper00004198
WBPaper00005077
WBPaper00024699
Curator_confirmedWBPerson48
WBPerson1843
Date_last_updated28 Dec 2005 00:00:00
Automated_descriptionPredicted to enable 3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing. Involved in obsolete negative regulation of transposition, DNA-mediated; olfactory learning; and regulatory ncRNA-mediated post-transcriptional gene silencing. Located in cytosol; mutator focus; and nucleus. Expressed in AWCL; AWCR; and somatic cell. Is an ortholog of human EXD3 (exonuclease 3'-5' domain containing 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZK1098.8
Corresponding_transcriptZK1098.8.1
Other_sequenceCR03715
CBC14770_1
CRC08288_1
Associated_featureWBsf667292
WBsf667293
WBsf227313
Experimental_infoRNAi_result (12)
Expr_pattern (11)
Drives_constructWBCnstr00003803
WBCnstr00014695
WBCnstr00014696
WBCnstr00018512
WBCnstr00036084
Construct_productWBCnstr00014695
WBCnstr00014696
WBCnstr00018512
WBCnstr00036084
AntibodyWBAntibody00000828
Microarray_results (20)
Expression_cluster (133)
Interaction (31)
WBProcessWBbiopr:00000057
Map_infoMapIIIPosition0.579676Error0.00167
PositivePositive_cloneZK1098Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4504
4993
Pseudo_map_position
Reference (129)
RemarkSequence connection from [Ketting RF]
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene