WormBase Tree Display for Gene: WBGene00004121

WBGene00004121 SMap: S_parent: Sequence: F35B3
  Identity: Version: 2
    Name: CGC_name: ptrn-1 Person_evidence: WBPerson105
      Sequence_name: F35B3.5
      Molecular_name (13)
      Other_name: pqn-34 Person_evidence: WBPerson625
        CELE_F35B3.5 Accession_evidence: NDB BX284606
      Public_name: ptrn-1
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:34 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 21 Dec 2012 09:25:09 WBPerson2970 Name_change: CGC_name: ptrn-1
                Other_name: pqn-34
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ptrn
    Allele (123)
    Possibly_affected_by: WBVar02152829
      WBVar02153052
    Strain: WBStrain00029074
      WBStrain00029075
    RNASeq_FPKM (74)
    GO_annotation (21)
    Ortholog: WBGene00059820 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00036061 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            WormBase-Compara
      WBGene00148658 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00128978 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224080 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g3514 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13363 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g15411 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g11188 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9493 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g10873 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8915 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g10866 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g5085 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g4699 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00058.g2931 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ptrn-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13523 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00031.g1726 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_02160 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023376 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g04479 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g16192 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0036700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g20962 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00238715 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00112093 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00283206 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00259035 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289130 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0263197 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-060518-4 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-060503-811 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-070912-80 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoFinder
      ZFIN:ZDB-GENE-070705-301 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-030131-3016 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:29188 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:29307 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:19946 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1922434 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1916947 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:3036242 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1310950 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1565022 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1597412 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
    Structured_description: Automated_description: Enables microtubule minus-end binding activity. Involved in cytoplasmic microtubule organization and nematode larval development. Located in microtubule minus-end. Expressed in hypodermis; intestine; nervous system; and pharynx. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations. Is an ortholog of human CAMSAP1 (calmodulin regulated spectrin associated protein 1); CAMSAP2 (calmodulin regulated spectrin associated protein family member 2); and CAMSAP3 (calmodulin regulated spectrin associated protein family member 3). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0090131 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:19946)
  Molecular_info: Corresponding_CDS: F35B3.5a
      F35B3.5c
      F35B3.5d
      F35B3.5e
    Corresponding_CDS_history: F35B3.5a:wp137
      F35B3.5a:wp238
      F35B3.5b:wp241
    Corresponding_transcript: F35B3.5b
      F35B3.5a.1
      F35B3.5c.1
      F35B3.5d.1
      F35B3.5e.1
    Other_sequence (26)
    Associated_feature (12)
  Experimental_info: RNAi_result: WBRNAi00046282 Inferred_automatically: RNAi_primary
      WBRNAi00031747 Inferred_automatically: RNAi_primary
      WBRNAi00014292 Inferred_automatically: RNAi_primary
    Expr_pattern (17)
    Drives_construct: WBCnstr00019023
      WBCnstr00019024
      WBCnstr00019026
      WBCnstr00019960
      WBCnstr00020914
      WBCnstr00020915
      WBCnstr00020916
      WBCnstr00037939
    Construct_product (16)
    Regulate_expr_cluster: WBPaper00056039:ptrn-1(tm5597)_downregulated
      WBPaper00056039:ptrn-1(tm5597)_upregulated
    Antibody: WBAntibody00002655
    Microarray_results (27)
    Expression_cluster (121)
    Interaction (86)
    Anatomy_function: WBbtf0643
      WBbtf0644
      WBbtf0645
  Map_info: Map: X Position: 24.0718 Error: 0.001129
    Positive: Positive_clone: F35B3 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (22)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene