WormBase Tree Display for Gene: WBGene00004419

WBGene00004419 SMap: S_parent: Sequence: Y24D9A
  Identity: Version: 3
    Name: CGC_name: rpl-7A
      Sequence_name: Y24D9A.4
      Molecular_name: Y24D9A.4
        Y24D9A.4.1
        CE27398
      Other_name: rpl-8 CGC_data_submission
        phi-22 Person_evidence: WBPerson2582
        Surf-3 Paper_evidence: WBPaper00013574
        CELE_Y24D9A.4 Accession_evidence: NDB BX284604
      Public_name: rpl-7A
    DB_info: Database: AceView gene 4F154
        WormQTL gene WBGene00004419
        WormFlux gene WBGene00004419
        NDB locus_tag CELE_Y24D9A.4
        Panther gene CAEEL|WormBase=WBGene00004419|UniProtKB=Q966C6
          family PTHR23105
        NCBI gene 177203
        RefSeq protein NM_171316.9
        SwissProt UniProtAcc Q966C6
        UniProt_GCRP UniProtAcc Q966C6
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
        2 06 Jul 2004 10:07:57 WBPerson1971 Name_change: CGC_name: rpl-7A
        3 17 Mar 2005 13:55:29 WBPerson2970 Name_change: Other_name: phi-22
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele (32)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl8 using blastP
    Strain: WBStrain00003400
    RNASeq_FPKM (74)
    GO_annotation: 00090857
      00090858
      00090859
      00090860
      00090861
      00090862
      00090863
    Ortholog: WBGene00059548 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00024877 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            WormBase-Compara
      WBGene00123868 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00089666 Pristionchus pacificus From_analysis: OMA
            WormBase-Compara
      WBGene00226602 Brugia malayi From_analysis: WormBase-Compara
      WBGene00229500 Brugia malayi From_analysis: WormBase-Compara
      WBGene00268293 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g11387 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g7245 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP28.g5533 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7102 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g15865 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g14538 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6786 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9657 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Cang_2012_03_13_00135.g5289 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_12750.g23913 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g14657 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold589.g4943 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00891.g16516 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_08391.g38666 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19276 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014631 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01555 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g21667 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40122200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g10188 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00239558 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00098070 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00272254 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00272650 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00273419 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00274933 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00274936 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00275298 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00277247 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00278000 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00278498 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00278737 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00282359 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00283094 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00284182 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00255871 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290673 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000003968 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      SGD:S000001025 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0014026 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-031001-9 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:10364 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1353472 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:3649357 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1307586 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:41072884 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00004412 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00010896 Caenorhabditis elegans From_analysis: Panther
      WBGene00012964 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00009993 Caenorhabditis elegans From_analysis: Panther
      WBGene00017997 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Concise_description: rpl-7A encodes a large ribosomal subunit L7a protein required in mass RNAi assays for fertility, vulval development, and general health; the rpl-7A transcription unit has one nonsense transcript that is up-regulated in vivo by smg[-] mutations, indicating that rpl-7A is a natural substrate for SMG-mediated nonsense suppresssion; several other natural mRNA substrates of SMG suppression (e.g., rpl-3, rpl-10, rpl-12) have protein products that are involved in translation; RPL-7A binds bovine calmodulin in vitro in a calcium-dependent manner. Paper_evidence: WBPaper00004313
            WBPaper00005654
            WBPaper00006395
            WBPaper00031011
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 04 May 2010 00:00:00
      Automated_description: Enables calmodulin binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL7A (ribosomal protein L7a). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y24D9A.4
    Corresponding_CDS_history: Y24D9A.4b:wp121
      Y24D9A.4c:wp270
    Corresponding_transcript: Y24D9A.4.1
    Corresponding_transcript_history: Y24D9A.4d:wp195
    Other_sequence (195)
    Associated_feature: WBsf651726
      WBsf667668
      WBsf667875
      WBsf981739
      WBsf229958
  Experimental_info: RNAi_result (13)
    Expr_pattern: Chronogram355
      Expr6909
      Expr1020085
      Expr1032223
      Expr1159240
      Expr2015481
      Expr2033716
    Drives_construct: WBCnstr00003868
    Microarray_results (30)
    Expression_cluster (184)
    Interaction (312)
  Map_info: Map: IV Position: 0.197591 Error: 0.00512
    Positive: Positive_clone: Y24D9A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00013574
    WBPaper00028807
    WBPaper00031011
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00060662
    WBPaper00062737
    WBPaper00064158
    WBPaper00065861
  Remark: This gene previously was known as rpl-8 with rpl-7A as an other name. Following advice from the CGC, this situation has been reversed and rpl-7A is now the main (CGC approved) name for this gene [040706 krb]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene