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WormBase Tree Display for Gene: WBGene00004509

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Name Class

WBGene00004509SMapS_parentSequenceCHROMOSOME_I
IdentityVersion1
NameCGC_namerrf-2Person_evidenceWBPerson398
Sequence_nameM01G12.12
Molecular_nameM01G12.12
M01G12.12.1
CE23872
M01G12.12.2
Other_nameCELE_M01G12.12Accession_evidenceNDBBX284601
Public_namerrf-2
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:35WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrrf
Allele (214)
StrainWBStrain00007151
In_clusterconserved_miRNA_siRNA_cluster
RNASeq_FPKM (74)
GO_annotation (13)
OrthologWBGene00065457Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00023729Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00026758Caenorhabditis briggsaeFrom_analysisOrthoMCL
WBGene00038666Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00144891Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00141613Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00120394Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00223866Brugia malayiFrom_analysisWormBase-Compara
WBGene00225320Brugia malayiFrom_analysisWormBase-Compara
CSP26.g16515Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g17805Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g10885Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g13268Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g25747Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g15458Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_04853.g19165Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_I.g263Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15184Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17871Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00714.g14701Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_13162Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000010Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g06449Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14241Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14842Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g17308Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g18634Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19319Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g19320Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g37Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g9251Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10108210Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g2400Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00244037Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00248856Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00098113Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00271994Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00274061Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00283817Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257571Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00260457Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00261824Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00285572Trichuris murisFrom_analysisWormBase-Compara
WBGene00297864Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00001214Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00004508Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00004510Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionrrf-2 encodes an RNA-directed RNA polymerase (RdRP) homolog of unknown function; RRF-2 is not obviously required for either somatic or germline RNAi, or for transitive RNAi.Paper_evidenceWBPaper00004137
WBPaper00004981
WBPaper00013304
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable RNA-dependent RNA polymerase activity. Acts upstream of or within IRE1-mediated unfolded protein response. Predicted to be part of nuclear RNA-directed RNA polymerase complex.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSM01G12.12
Corresponding_transcriptM01G12.12.1
M01G12.12.2
Associated_featureWBsf985471
WBsf985472
WBsf1010840
WBsf220407
WBsf220408
Experimental_infoRNAi_resultWBRNAi00004657Inferred_automaticallyRNAi_primary
WBRNAi00050780Inferred_automaticallyRNAi_primary
WBRNAi00034366Inferred_automaticallyRNAi_primary
Expr_patternExpr1015641
Expr1032311
Expr1154473
Expr2015544
Expr2033779
Regulate_expr_clusterWBPaper00027111:rrf-2(ok210)_downregulated
WBPaper00027111:rrf-2(ok210)_upregulated
Microarray_results (18)
Expression_cluster (237)
InteractionWBInteraction000301293
WBInteraction000305949
WBInteraction000333765
WBInteraction000376484
WBInteraction000437306
WBInteraction000524314
WBProcessWBbiopr:00000057
Map_infoMapIPosition13.0561Error0.002235
PositivePositive_cloneM01G12Inferred_automaticallyFrom CDS info
From sequence, transcript, pseudogene data
Mapping_dataMulti_point4645
5009
Pseudo_map_position
ReferenceWBPaper00004137
WBPaper00004173
WBPaper00004981
WBPaper00012007
WBPaper00023918
WBPaper00031961
WBPaper00031962
WBPaper00035324
WBPaper00038491
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene