WormBase Tree Display for Gene: WBGene00004912

WBGene00004912 SMap: S_parent: Sequence: T08A9
  Identity: Version: 1
    Name: CGC_name: sng-1 Person_evidence: WBPerson451
      Sequence_name: T08A9.3
      Molecular_name: T08A9.3
        T08A9.3.1
        CE21167
      Other_name: sng1 Accession_evidence: EMBL AF079373
        CELE_T08A9.3 Accession_evidence: NDB BX284606
      Public_name: sng-1
    DB_info: Database: AceView gene XH947
        WormQTL gene WBGene00004912
        WormFlux gene WBGene00004912
        NDB locus_tag CELE_T08A9.3
        Panther gene CAEEL|WormBase=WBGene00004912|UniProtKB=O76735
          family PTHR10838
        NCBI gene 180995
        RefSeq protein NM_076838.6
        SwissProt UniProtAcc O76735
        TREEFAM TREEFAM_ID TF320995
        UniProt_GCRP UniProtAcc O76735
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sng
    Allele (47)
    Legacy_information: [Nonet M] 30% sequence identity to vertebrate synaptogyrin. Expressed in nervous system, possible synapse marker. Predicted gene T08A9.3
    Strain: WBStrain00029051
      WBStrain00031340
      WBStrain00003813
      WBStrain00055741
    RNASeq_FPKM (74)
    GO_annotation: 00038690
      00038691
      00038692
      00038693
      00038694
      00038695
      00038696
      00038697
      00113320
    Ortholog: WBGene00051350 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00032228 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00164105 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00131826 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00116997 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00225930 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g3254 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13374 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6541 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19906 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g2933 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g14043 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1756 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g17268 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g26932 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g21261 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-sng-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12490 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00022.g1335 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_00199 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_024750 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g07374 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_X0203000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g19386 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00242191 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00265942 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289396 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0033876 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-041010-169 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-050522-541 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-070424-19 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-070822-6 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-090624-2 Danio rerio From_analysis: Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:11501 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      HGNC:11499 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:11498 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      HGNC:11502 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      MGI:1328323 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      MGI:1328324 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
      MGI:1341881 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
      MGI:1928903 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
      RGD:3801 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
      RGD:621334 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      RGD:1307737 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            Panther
      RGD:1311801 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            Panther
    Structured_description: Concise_description: sng-1 encodes the C. elegans synaptogyrin ortholog, a vertebrate integral membrane synaptic vesicle protein; loss-of-function mutations in sng-1 result in no obvious defects in synaptogenesis or neuronal activity, suggesting that SNG-1 is likely required for more subtle neuronal functions; SNG-1::GFP reporters are expressed throughout the nervous system in neurons in the dorsal and ventral nerve cords, as well as the anterior nerve ring; SNG-1 colocalizes with the synaptic vesicle component SNT-1. Paper_evidence: WBPaper00003641
            WBPaper00004838
            WBPaper00027627
          Curator_confirmed: WBPerson1843
          Date_last_updated: 29 Jan 2008 00:00:00
      Automated_description: Predicted to be involved in regulation of exocytosis and synaptic vesicle transport. Located in synaptic vesicle. Expressed in muscle cell and nervous system. Is an ortholog of human SYNGR1 (synaptogyrin 1); SYNGR2 (synaptogyrin 2); and SYNGR4 (synaptogyrin 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T08A9.3
    Corresponding_transcript: T08A9.3.1
    Other_sequence: AE04020
      AYC02272_1
      FC554966.1
      JI175348.1
      ACC08727_1
    Associated_feature: WBsf662963
      WBsf1005808
      WBsf1023226
      WBsf235915
      WBsf235916
      WBsf235917
  Experimental_info: RNAi_result: WBRNAi00052824 Inferred_automatically: RNAi_primary
      WBRNAi00018418 Inferred_automatically: RNAi_primary
      WBRNAi00027778 Inferred_automatically: RNAi_primary
      WBRNAi00089515 Inferred_automatically: RNAi_primary
    Expr_pattern (12)
    Drives_construct (13)
    Construct_product (19)
    Antibody: WBAntibody00000400
    Microarray_results (19)
    Expression_cluster (159)
    Interaction (40)
  Map_info: Map: X Position: -1.75575 Error: 0.002167
    Positive: Positive_clone: T08A9 Person_evidence: WBPerson451
          Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4679
        4948
    Pseudo_map_position
  Reference (25)
  Remark: Predicted splicing incorrect (10/97)
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene