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WormBase Tree Display for Gene: WBGene00004923

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Name Class

WBGene00004923EvidencePerson_evidenceWBPerson508
SMapS_parentSequenceY75B7AL
IdentityVersion1
NameCGC_namesnt-3Person_evidenceWBPerson508
Sequence_nameY75B7AL.3
Molecular_nameY75B7AL.3
Y75B7AL.3.1
CE48486
Y75B7AL.3.2
Y75B7AL.3.3
Other_nameCELE_Y75B7AL.3Accession_evidenceNDBBX284605
Public_namesnt-3
DB_infoDatabaseAceViewgene5B836
WormQTLgeneWBGene00004923
WormFluxgeneWBGene00004923
NDBlocus_tagCELE_Y75B7AL.3
PanthergeneCAEEL|WormBase=WBGene00004923|UniProtKB=Q965S5
familyPTHR10024
NCBIgene190698
RefSeqproteinNM_001392474.1
TrEMBLUniProtAccQ965S5
UniProt_GCRPUniProtAccQ965S5
OMIMgene600104
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsnt
Allele (232)
RNASeq_FPKM (74)
GO_annotation (19)
OrthologWBGene00053142Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00028703Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00123131Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00155794Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00194059Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00193413Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00155156Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00123684Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00126931Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00137139Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00137655Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00053139Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00060689Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00064868Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00054182Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00227391Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g1327Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2432Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5945Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g6800Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g14458Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10600Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15078Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g12084Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g15732Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20933Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_08516.g21554Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-snt-3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold506.g2441Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00786.g15461Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08341Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018984Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07200Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21156Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50049100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g13211Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00244114Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277561Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00264119Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00286641Trichuris murisFrom_analysisWormBase-Compara
WBGene00302872Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0004242Drosophila melanogasterFrom_analysisOrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-040718-110Danio rerioFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-040718-165Danio rerioFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-060503-315Danio rerioFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
ZFIN:ZDB-GENE-060503-166Danio rerioFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
HGNC:11509Homo sapiensFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
HGNC:19264Homo sapiensFrom_analysisOrthoFinder
Panther
PhylomeDB
HGNC:11510Homo sapiensFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
MGI:99667Mus musculusFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
MGI:1859867Mus musculusFrom_analysisOrthoFinder
Panther
PhylomeDB
RGD:3804Rattus norvegicusFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
RGD:3803Rattus norvegicusFrom_analysisOMA
OrthoFinder
Panther
PhylomeDB
ParalogWBGene00004921Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004922Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004924Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00011682Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004926Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00004925Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004316Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006306Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020861Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnables calcium ion sensor activity and calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and synaptic vesicle cycle. Predicted to be located in axon; plasma membrane; and secretory vesicle. Expressed in body wall musculature; neurons; and somatic nervous system. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 7. Is an ortholog of human SYT1 (synaptotagmin 1) and SYT2 (synaptotagmin 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0110659Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11510)
DOID:3635Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:11510)
Molecular_infoCorresponding_CDSY75B7AL.3
Corresponding_CDS_historyY75B7AL.3:wp155
Y75B7AL.3:wp216
Y75B7AL.3:wp238
Corresponding_transcriptY75B7AL.3.1
Y75B7AL.3.2
Y75B7AL.3.3
Other_sequence (69)
Associated_featureWBsf718282
WBsf999315
WBsf999316
WBsf1019170
WBsf1019171
WBsf233328
WBsf233329
Experimental_infoRNAi_resultWBRNAi00058430Inferred_automaticallyRNAi_primary
WBRNAi00112396Inferred_automaticallyRNAi_primary
Expr_patternExpr15676
Expr15677
Expr1025704
Expr1032452
Expr1161850
Expr2015978
Expr2034213
Drives_constructWBCnstr00042473
Construct_productWBCnstr00042474
Microarray_results176195_at
GPL14144_Y75B7AL.3_523-582_0.881_22_C
GPL14144_Y75B7AL.3_765-824_0.898_13_B
GPL19516_CGZ0054742
GPL21109_Y75B7AL.3
GPL3518_CE26302
GPL8673_Y75B7AL_3P00666
Expression_cluster (121)
Map_infoMapVPosition-19.5443Error0.066466
PositivePositive_cloneY75B7ALInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00052782
WBPaper00055090
WBPaper00061027
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene