WormBase Tree Display for Gene: WBGene00005123
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WBGene00005123 | Evidence | Person_evidence | WBPerson522 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F17A2 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | srd-45 | Person_evidence | WBPerson522 | |||||
Sequence_name | F17A2.7 | ||||||||
Molecular_name | F17A2.7 | ||||||||
F17A2.7.1 | |||||||||
CE03217 | |||||||||
Other_name | CELE_F17A2.7 | Accession_evidence | NDB | BX284606 | |||||
Public_name | srd-45 | ||||||||
DB_info | Database | AceView | gene | XM947 | |||||
WormQTL | gene | WBGene00005123 | |||||||
WormFlux | gene | WBGene00005123 | |||||||
NDB | locus_tag | CELE_F17A2.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00005123|UniProtKB=Q19505 | |||||||
family | PTHR22945 | ||||||||
NCBI | gene | 184603 | |||||||
RefSeq | protein | NM_077663.1 | |||||||
SwissProt | UniProtAcc | Q19505 | |||||||
TREEFAM | TREEFAM_ID | TF315493 | |||||||
UniProt_GCRP | UniProtAcc | Q19505 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | srd | ||||||||
Allele (24) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00064938 | ||||||||
00064939 | |||||||||
Ortholog | WBGene00058740 | Caenorhabditis remanei | From_analysis | OMA | |||||
TreeFam | |||||||||
WBGene00027774 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
OMA | |||||||||
WBGene00143120 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WBGene00130272 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
CSP26.g1056 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP38.g1187 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP38.g1188 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP38.g1189 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP38.g12700 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP38.g12701 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP38.g249 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
Cnig_chr_X.g25670 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Cnig_chr_X.g25671 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g10112 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_02062.g24663 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_01907 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_025420 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
chrX_pilon.g20237 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00095322 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
Paralog (68) | |||||||||
Structured_description | Automated_description | Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F17A2.7 | |||||||
Corresponding_transcript | F17A2.7.1 | ||||||||
Experimental_info | RNAi_result | WBRNAi00023714 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00044852 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023202 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023427 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00013446 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00024002 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1012688 | ||||||||
Expr1148816 | |||||||||
Expr2016245 | |||||||||
Expr2034475 | |||||||||
Drives_construct | WBCnstr00035180 | ||||||||
Construct_product | WBCnstr00035180 | ||||||||
Microarray_results (14) | |||||||||
Expression_cluster (29) | |||||||||
SAGE_tag | SAGE:cagttattgg | Strand | Sense | ||||||
Unambiguously_mapped | |||||||||
Interaction (75) | |||||||||
Map_info | Map | X | Position | 7.02531 | Error | 0.001584 | |||
Positive | Positive_clone | F17A2 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |