WormBase Tree Display for Gene: WBGene00006027
expand all nodes | collapse all nodes | view schema
WBGene00006027 | SMap | S_parent | Sequence | F09F3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | srx-136 | Person_evidence | WBPerson522 | |||||
Sequence_name | F09F3.12 | ||||||||
Molecular_name | F09F3.12 | ||||||||
F09F3.12.1 | |||||||||
CE36287 | |||||||||
Other_name | CELE_F09F3.12 | Accession_evidence | NDB | BX284605 | |||||
Public_name | srx-136 | ||||||||
DB_info | Database | AceView | gene | 5O339 | |||||
WormQTL | gene | WBGene00006027 | |||||||
WormFlux | gene | WBGene00006027 | |||||||
NDB | locus_tag | CELE_F09F3.12 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006027|UniProtKB=P90823 | |||||||
family | PTHR46611 | ||||||||
NCBI | gene | 184257 | |||||||
RefSeq | protein | NM_074034.3 | |||||||
TREEFAM | TREEFAM_ID | TF315574 | |||||||
TrEMBL | UniProtAcc | P90823 | |||||||
UniProt_GCRP | UniProtAcc | P90823 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | srx | ||||||||
Allele (25) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00049144 | ||||||||
Ortholog | WBGene00152487 | Caenorhabditis brenneri | From_analysis | OMA | |||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00032162 | Caenorhabditis briggsae | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WBGene00052899 | Caenorhabditis remanei | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WBGene00077903 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
WBGene00271630 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
CBOVI.g105 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP21.g4865 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
CSP26.g10012 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g18539 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g7998 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP32.g10079 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g16841 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g24716 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
Cnig_chr_V.g16381 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g14165 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_03271.g29625 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
Sp34_50170110 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
WBGene00277612 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
WBGene00279384 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
Paralog (94) | |||||||||
Structured_description | Automated_description | Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F09F3.12 | |||||||
Corresponding_CDS_history | F09F3.12:wp117 | ||||||||
Corresponding_transcript | F09F3.12.1 | ||||||||
Associated_feature | WBsf232837 | ||||||||
Experimental_info | RNAi_result | WBRNAi00044143 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00030716 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012991 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1018772 | ||||||||
Expr1148112 | |||||||||
Expr2016818 | |||||||||
Drives_construct | WBCnstr00034583 | ||||||||
Construct_product | WBCnstr00034583 | ||||||||
Microarray_results (21) | |||||||||
Expression_cluster (29) | |||||||||
Interaction (155) | |||||||||
Map_info | Map | V | Position | 5.69376 | Error | 0.000404 | |||
Positive | Positive_clone | F09F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |