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WormBase Tree Display for Gene: WBGene00007197

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Name Class

WBGene00007197SMapS_parentSequenceB0513
IdentityVersion2
NameCGC_nameprdh-1Person_evidenceWBPerson2173
Sequence_nameB0513.5
Molecular_nameB0513.5a
B0513.5a.1
CE37309
B0513.5b
CE49937
B0513.5b.1
Other_nameprodhPaper_evidenceWBPaper00050536
CELE_B0513.5Accession_evidenceNDBBX284604
Public_nameprdh-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:47WBPerson1971EventImportedInitial conversion from CDS class of WS125
211 Jun 2018 11:44:56WBPerson1983Name_changeCGC_nameprdh-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classprdh
Allele (134)
RNASeq_FPKM (74)
GO_annotation (15)
OrthologWBGene00040963Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00150198Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00079398Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00084164Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00084304Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00162922Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00211604Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00147077Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00163316Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00155310Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00126687Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00092203Pristionchus pacificusFrom_analysisOMA
WBGene00222106Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g8822Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g485Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20058Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7472Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g3516Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g24722Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14259Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g6911Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g5993Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g9391Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g13891Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g19644Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g8323Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g8324Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00171.g6163Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-B0513.5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g16392Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00285.g8686Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22489Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_013132Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_013133Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g03413Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g3940Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40270100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g12396Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00242250Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00277116Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00264004Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000004132Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
FB:FBgn0003423Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040718-87Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Panther
ZFIN:ZDB-GENE-041008-73Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-101116-1Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
PhylomeDB
HGNC:9453Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:17325Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Panther
MGI:97770Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1929093Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Panther
RGD:1306761Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Panther
RGD:1590932Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionAutomated_descriptionPredicted to enable FAD binding activity and proline dehydrogenase activity. Predicted to be involved in proline catabolic process to glutamate. Predicted to be located in mitochondrion. Used to study chromosome 22q11.2 deletion syndrome, distal. Human ortholog(s) of this gene implicated in hyperprolinemia type 1 and schizophrenia 4. Is an ortholog of human PRODH (proline dehydrogenase 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoExperimental_modelDOID:0060413Homo sapiensPaper_evidenceWBPaper00047004
Curator_confirmedWBPerson324
Date_last_updated20 Sep 2018 00:00:00
Potential_modelDOID:0070080Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9453)
DOID:0080542Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9453)
DOID:9252Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:9453)
Disease_relevance22q11.2 deletion syndrome (22q11.2DS) is the most common human deletion syndrome caused by deletion of a small piece of chromosome 22, characterized by neurodevelopmental defects, schizophrenia, congenital cardiac and craniofacial abnormalites (includes DiGeorge Syndrome and velocardiofacial syndrome); the 22q11.2 deletion overlaps several protein-coding genes including PRODH (Proline dehydrogenase (oxidase) 1); the C. elegans ortholog prdh-1 knockdown phenotypes include reduced accumulation rate of newly synthesized proteins, extended life span and increased thermo-tolerance.Homo sapiensPaper_evidenceWBPaper00047004
Accession_evidenceOMIM611867
239500
600850
606810
Curator_confirmedWBPerson324
Date_last_updated15 Sep 2015 00:00:00
Models_disease_in_annotationWBDOannot00000362
Molecular_infoCorresponding_CDS (2)
Corresponding_CDS_historyB0513.5:wp131
Corresponding_transcriptB0513.5a.1
B0513.5b.1
Other_sequence (25)
Associated_featureWBsf998468
WBsf998469
WBsf998470
WBsf231172
Experimental_infoRNAi_resultWBRNAi00009831Inferred_automaticallyRNAi_primary
WBRNAi00000804Inferred_automaticallyRNAi_primary
WBRNAi00113437Inferred_automaticallyRNAi_primary
WBRNAi00039157Inferred_automaticallyRNAi_primary
Expr_patternExpr1021073
Expr1143312
Expr2000233
Expr2018453
Drives_constructWBCnstr00033926
Construct_productWBCnstr00033926
Microarray_results (20)
Expression_cluster (140)
Interaction (13)
Map_infoMapIVPosition10.894
PositivePositive_cloneB0513Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00049828
WBPaper00055090
WBPaper00056909
WBPaper00061547
WBPaper00063976
WBPaper00064064
WBPaper00065331
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene