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WormBase Tree Display for Gene: WBGene00007364

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Name Class

WBGene00007364SMapS_parentSequenceC06B3
IdentityVersion2
NameCGC_namestdh-3
Sequence_nameC06B3.5
Molecular_nameC06B3.5
C06B3.5.1
CE43017
Other_nameCELE_C06B3.5Accession_evidenceNDBBX284605
Public_namestdh-3
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:47WBPerson1971EventImportedInitial conversion from CDS class of WS125
227 Nov 2007 15:15:52WBPerson2970Name_changeCGC_namestdh-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classstdh
Allele (30)
RNASeq_FPKM (74)
GO_annotation00058978
00058979
00058980
00058981
00058982
Contained_in_operonCEOP5519
OrthologWBGene00032555Caenorhabditis briggsaeFrom_analysisOrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00159796Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00145885Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00158390Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00119754Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00052915Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00095119Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00162870Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00032556Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00222265Brugia malayiFrom_analysisWormBase-Compara
WBGene00269250Brugia malayiFrom_analysisWormBase-Compara
CSP21.g11152Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g9953Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g9954Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g21160Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g21161Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g748Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g749Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g14395Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g14396Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g8094Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP32.g9104Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g15270Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g247Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g248Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g10612Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g13941Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g13942Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g20748Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g22490Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7638Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_V.g16403Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g16404Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14182Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14183Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01040.g17847Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_03718Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018685Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04701Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g23885Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g5705Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50095600Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g16363Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00211540Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00245429Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00110980Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00272087Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00274908Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00275219Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00305211Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00260394Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00264777Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00293940Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000363Saccharomyces cerevisiaeFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0029975Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
FB:FBgn0032614Drosophila melanogasterFrom_analysisOMA
OrthoInspector
PhylomeDB
ZFIN:ZDB-GENE-030131-1346Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-030131-5628Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030804-21Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
HGNC:5212Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
HGNC:18646Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:107177Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
MGI:1926967Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
SonicParanoid
MGI:1919802Mus musculusFrom_analysisOMA
OrthoFinder
OrthoInspector
RGD:708367Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
PhylomeDB
SonicParanoid
RGD:621805Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
OMA
OrthoFinder
PhylomeDB
RGD:1308433Rattus norvegicusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Paralog (38)
Structured_descriptionConcise_descriptionstdh-3 encodes a putative steroid dehydrogenase orthologous to human HSD17B3 (OMIM:605573, mutated in pseudohermaphroditism), HSD17B12 (OMIM:609574), and HSDL1, and paralogous to LET-767, STDH-1/-2, and STDH-4; STDH-3 has no obvious function in mass RNAi assays.Paper_evidenceWBPaper00006204
Curator_confirmedWBPerson567
Date_last_updated26 Nov 2007 00:00:00
Automated_descriptionPredicted to enable oxidoreductase activity. Predicted to be involved in fatty acid elongation. Predicted to be located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in 17-beta hydroxysteroid dehydrogenase 3 deficiency and Alzheimer's disease. Is an ortholog of human HSD17B12 (hydroxysteroid 17-beta dehydrogenase 12).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:10652Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5212)
DOID:1923Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5212)
DOID:0112248Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:5212)
Molecular_infoCorresponding_CDSC06B3.5
Corresponding_CDS_historyC06B3.5:wp194
Corresponding_transcriptC06B3.5.1
Other_sequenceJI167301.1
BXC04734_1
PPC11312_1
Associated_featureWBsf232848
Experimental_infoRNAi_resultWBRNAi00039851Inferred_automaticallyRNAi_primary
WBRNAi00028553Inferred_automaticallyRNAi_primary
WBRNAi00010277Inferred_automaticallyRNAi_primary
Expr_patternExpr1010421
Expr1143933
Expr2016958
Expr2035106
Microarray_results (11)
Expression_cluster (31)
SAGE_tagSAGE:aagcaccagccttctttStrandAntisense
Interaction (59)
Map_infoMapVPosition5.75578Error0.004356
PositivePositive_cloneC06B3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00018598
WBPaper00038491
WBPaper00042257
WBPaper00055090
WBPaper00061413
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene