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WormBase Tree Display for Gene: WBGene00008419

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Name Class

WBGene00008419SMapS_parentSequenceD2030
IdentityVersion3
NameCGC_namewdr-23Person_evidenceWBPerson590
Sequence_nameD2030.9
Molecular_name (16)
Other_namexrep-1Paper_evidenceWBPaper00036411
Person_evidenceWBPerson1284
CELE_D2030.9Accession_evidenceNDBBX284601
Public_namewdr-23
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
226 Mar 2007 13:57:19WBPerson2970Name_changeCGC_namewdr-23
301 Oct 2010 14:04:48WBPerson2970Name_changeOther_namexrep-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classwdr
Allele (92)
StrainWBStrain00001583
WBStrain00001735
WBStrain00005859
WBStrain00005861
WBStrain00055405
RNASeq_FPKM (74)
GO_annotation (26)
Contained_in_operonCEOP1408
OrthologWBGene00032973Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00156709Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00101974Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WBGene00192518Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00223306Brugia malayiFrom_analysisWormBase-Compara
WBGene00229960Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12097Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g3555Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g4740Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8602Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g10812Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g22270Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g11545Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g7050Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1656Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g9316Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00125.g5048Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-wdr-23Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g21003Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00873.g16335Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_12298Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000097Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12012Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g8213Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10099200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1422Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00128190Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00237904Onchocerca volvulusFrom_analysisWormBase-Compara
FB:FBgn0034527Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-050809-116Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:20258Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:90168Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1311288Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptionwdr-23 encodes a WD40 repeat-containing protein; WDR-23 functions as part of a CUL-4/DDB-1 ubiquitin ligase complex that negatively regulates accumulation and hence, transcriptional activation activity of the SKN-1 transcription factor in intestinal nuclei; wdr-23 activity is thus required for regulation of stress resistance, longevity, and normal growth and development; WDR-23 physically interacts with DDB-1 and SKN-1, thus likely serving as a bridge between the ubiquitin ligase complex and its SKN-1 substrate; in regulating skn-1 function, wdr-23 appears to act downstream of the p38 MAPK pathway and together with gsk-3 and the daf-2-mediated insulin signaling pathway; WDR-23 is expressed in the intestine, hypodermis, and neurons, where it localizes to nuclei.Paper_evidenceWBPaper00032980
Curator_confirmedWBPerson1843
Date_last_updated06 Apr 2010 00:00:00
Automated_descriptionEnables RNA polymerase II-specific DNA-binding transcription factor binding activity. Involved in several processes, including determination of adult lifespan; negative regulation of cellular response to manganese ion; and proteasome-mediated ubiquitin-dependent protein catabolic process. Located in several cellular components, including intracellular membrane-bounded organelle; neuronal cell body; and striated muscle dense body. Expressed in ASIL; ASIR; head; muscle cell; and tail. Is an ortholog of human DCAF11 (DDB1 and CUL4 associated factor 11).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSD2030.9a
D2030.9b
D2030.9c
D2030.9d
D2030.9e
Corresponding_transcriptD2030.9a.1
D2030.9a.2
D2030.9b.1
D2030.9c.1
D2030.9d.1
D2030.9e.1
Other_sequence (26)
Associated_feature (17)
Experimental_infoRNAi_result (54)
Expr_pattern (17)
Drives_construct (12)
Construct_product (14)
Regulate_expr_clusterWBPaper00042215:wdr-23(tm1817)_downregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00059566:wdr-23(mac32)_downregulated
WBPaper00059566:wdr-23(mac32)_upregulated
Microarray_results (40)
Expression_cluster (155)
Interaction (42)
Map_infoMapIPosition2.19591Error0.005029
PositivePositive_cloneD2030Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (48)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene