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WormBase Tree Display for Gene: WBGene00009232

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Name Class

WBGene00009232SMapS_parentSequenceF28H6
IdentityVersion2
NameCGC_namenkat-1Paper_evidenceWBPaper00027001
Person_evidenceWBPerson2238
WBPerson4780
WBPerson4778
Sequence_nameF28H6.3
Molecular_nameF28H6.3
F28H6.3.1
CE18648
Other_nameCELE_F28H6.3Accession_evidenceNDBBX284606
Public_namenkat-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
206 Apr 2006 09:26:55WBPerson2970Name_changeCGC_namenkat-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnkat
Allele (53)
StrainWBStrain00031497
WBStrain00031508
RNASeq_FPKM (74)
GO_annotation00104184
00104185
00104186
00104187
00104188
00104189
00116987
00116988
OrthologWBGene00031679Caenorhabditis briggsaeFrom_analysisOMA
WormBase-Compara
WBGene00063308Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00066931Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00143927Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00031645Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00225448Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g11675Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g12519Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g8447Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g222Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP31.g11538Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g13639Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g13792Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g23434Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP38.g5806Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g6468Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP40.g18164Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00157.g5852Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_X.g26425Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_X.g26478Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp5_scaffold_01342.g20233Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_02478Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_15498Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_15516Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_023073Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_025858Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_026281Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g04092Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g19361Panagrellus redivivusFrom_analysisWormBase-Compara
chrX_pilon.g20527Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00238708Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00116843Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00257437Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288292Trichuris murisFrom_analysisWormBase-Compara
WBGene00297989Trichuris murisFrom_analysisWormBase-Compara
SGD:S000003596Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
SonicParanoid
FB:FBgn0037955Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-1299Danio rerioFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-120214-33Danio rerioFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-2676Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:1564Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:33238Homo sapiensFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1917516Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:2677849Mus musculusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1306912Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1359262Rattus norvegicusFrom_analysisInparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00010984Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00009628Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00011436Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00016333Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionnkat-1 encodes kynurenine aminotransferase III, an ortholog of mammalian KAT3.Paper_evidenceWBPaper00027001
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated11 Feb 2015 00:00:00
Automated_descriptionPredicted to enable kynurenine-oxoglutarate transaminase activity. Predicted to be involved in L-kynurenine metabolic process and biosynthetic process. Predicted to be located in mitochondrion. Expressed in RID; RIML; RIMR; RMDVL; and RMDVR. Is an ortholog of human KYAT1 (kynurenine aminotransferase 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF28H6.3
Corresponding_transcriptF28H6.3.1
Other_sequenceEX007779.1
FC818792.1
SRC04593_1
MH11205
FG349811.1
BMC05955_1
AYC04567_1
AE04264
Associated_featureWBsf1007835
WBsf1024360
Experimental_infoRNAi_resultWBRNAi00023728Inferred_automaticallyRNAi_primary
WBRNAi00024015Inferred_automaticallyRNAi_primary
WBRNAi00065063Inferred_automaticallyRNAi_primary
WBRNAi00031548Inferred_automaticallyRNAi_primary
WBRNAi00023216Inferred_automaticallyRNAi_primary
WBRNAi00014074Inferred_automaticallyRNAi_primary
WBRNAi00023447Inferred_automaticallyRNAi_primary
WBRNAi00045873Inferred_automaticallyRNAi_primary
WBRNAi00065062Inferred_automaticallyRNAi_primary
Expr_patternExpr12130
Expr1019558
Expr1149776
Expr2014266
Expr2032506
Drives_constructWBCnstr00020230
WBCnstr00032355
Construct_productWBCnstr00032355
Microarray_results (18)
Expression_cluster (82)
Interaction (100)
Map_infoMapXPosition16.52Error0.013834
PositivePositive_cloneF28H6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027001
WBPaper00038491
WBPaper00046333
WBPaper00055090
WBPaper00064989
WBPaper00065392
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene