WormBase Tree Display for Gene: WBGene00012682

WBGene00012682 SMap: S_parent: Sequence: Y39B6A
  Identity: Version: 2
    Name: CGC_name: asp-16 Person_evidence: WBPerson261
      Sequence_name: Y39B6A.23
      Molecular_name: Y39B6A.23
        Y39B6A.23.1
        CE29864
      Other_name: Y39B6B.j Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y39B6A.23 Accession_evidence: NDB BX284605
      Public_name: asp-16
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 23 Nov 2012 14:10:21 WBPerson2970 Name_change: CGC_name: asp-16
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: asp
    Allele (103)
    RNASeq_FPKM (74)
    GO_annotation: 00084795
      00084796
      00084797
      00119712
      00119713
    Ortholog: WBGene00105997 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00106393 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00111789 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00039341 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00223753 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g2066 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g15581 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP31.g26135 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP38.g7941 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      Cang_2012_03_13_28350.g27640 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_V.g21706 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_00997.g17417 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_04950.g34101 Caenorhabditis sinica From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09909 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11252 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g316 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50381810 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g17809 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00244151 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00244157 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00115380 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00115381 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00278598 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00278974 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00279465 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00279739 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258196 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00288389 Trichuris muris From_analysis: WormBase-Compara
      WBGene00288391 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000004110 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            SonicParanoid
      SGD:S000004111 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            SonicParanoid
      SGD:S000002551 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            SonicParanoid
      SGD:S000001277 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            SonicParanoid
      SGD:S000001478 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            OrthoFinder
            SonicParanoid
      SGD:S000006075 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Panther
            SonicParanoid
      FB:FBgn0011822 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            Panther
      FB:FBgn0051926 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            Panther
      FB:FBgn0051928 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            Panther
      ZFIN:ZDB-GENE-010620-1 Danio rerio From_analysis: EnsEMBL-Compara
            Panther
      ZFIN:ZDB-GENE-040630-3 Danio rerio From_analysis: EnsEMBL-Compara
            Panther
      HGNC:8890 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
      HGNC:9958 Homo sapiens From_analysis: EnsEMBL-Compara
            Panther
      MGI:109365 Mus musculus From_analysis: EnsEMBL-Compara
            Panther
      MGI:97898 Mus musculus From_analysis: EnsEMBL-Compara
            Panther
      MGI:97899 Mus musculus From_analysis: EnsEMBL-Compara
            Panther
      RGD:3554 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Panther
      RGD:61940 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Panther
    Paralog (17)
    Structured_description: Automated_description: Predicted to enable aspartic-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in lysosome. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); chronic fatigue syndrome; and congenital adrenal hyperplasia. Is an ortholog of human PGC (progastricsin) and REN (renin). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model (17)
  Molecular_info: Corresponding_CDS: Y39B6A.23
    Corresponding_transcript: Y39B6A.23.1
    Other_sequence: ACC21341_1
      EY465139.1
      MH05110
      MH10000
      Acan_isotig10539
      ACC03533_2
      PTC03231_1
      SSC02957_1
    Associated_feature: WBsf1003109
  Experimental_info: RNAi_result: WBRNAi00056177 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014753
      Expr1159681
    Microarray_results: A_12_P111650
      GPL14144_Y39B6A.23_1039-1098_0.956_1_A
      GPL19516_CGZ0044834
      GPL21109_Y39B6A.23
      GPL3518_CE29864
      GPL8304_CE_WBGene00012682_A
      GPL8673_Y39B6A_23P00167
      GPL8673_Y39B6A_23P00601
      GPL8673_Y39B6A_23P01056
    Expression_cluster (69)
  Map_info: Map: V Position: 18.4987
    Positive: Positive_clone: Y39B6A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00059378
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene