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WormBase Tree Display for Gene: WBGene00013668

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Name Class

WBGene00013668SMapS_parentSequenceY105E8A
IdentityVersion2
NameCGC_nameslc-30A5
Sequence_nameY105E8A.3
Molecular_nameY105E8A.3
Y105E8A.3.1
CE32233
Other_nameY105E8A.dCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y105E8A.3Accession_evidenceNDBBX284601
Public_nameslc-30A5
DB_infoDatabaseAceViewgene1O959
WormQTLgeneWBGene00013668
WormFluxgeneWBGene00013668
NDBlocus_tagCELE_Y105E8A.3
PanthergeneCAEEL|WormBase=WBGene00013668|UniProtKB=Q8WQB6
familyPTHR45755
NCBIgene173299
RefSeqproteinNM_170935.9
TREEFAMTREEFAM_IDTF315217
TrEMBLUniProtAccQ8WQB6
UniProt_GCRPUniProtAccQ8WQB6
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:55WBPerson1971EventImportedInitial conversion from CDS class of WS125
215 Jul 2019 14:29:07WBPerson1983Name_changeCGC_nameslc-30A5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classslc
Allele (175)
RNASeq_FPKM (74)
GO_annotation (19)
OrthologWBGene00030480Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00060873Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00156528Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00138067Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00227492Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9104Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1336Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g15669Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5855Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g8297Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g13420Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g13200Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g1828Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g21160Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g8140Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4674Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_10999.g22989Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-Y105E8A.3Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19057Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_04403.g32855Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_09153Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001473Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05759Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05764Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g05766Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g2662Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10007200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g2903Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00238573Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00304635Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00260446Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288799Trichuris murisFrom_analysisWormBase-Compara
SGD:S000002613Saccharomyces cerevisiaeFrom_analysisInparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0037875Drosophila melanogasterFrom_analysisOrthoFinder
OrthoInspector
SonicParanoid
ZFIN:ZDB-GENE-040718-6Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:19089Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1916298Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1306931Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00000393Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006590Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00010644Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00011821Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012712Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018948Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019803Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00019841Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00044481Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionY105E8A.3 encodes a protein with similarity to members of the SLC30A family of zinc transporters; a deletion mutation, tm3941, that affects Y105E8A.2 and Y105E8A.3 has been reported to result in a lethal or sterile phenotype by the National Bioresource Project of Japan; the product of Y105E8A.3 localizes to the endoplasmic reticulum in body wall muscle; about 50% of Y105E8A.3 transcripts are RNA edited to change A to G resulting in a synonymous change to residue 319 from an G to a G.Paper_evidenceWBPaper00038444
WBPaper00045975
Curator_confirmedWBPerson1843
WBPerson4025
Date_last_updated28 Dec 2014 00:00:00
Automated_descriptionPredicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in intracellular zinc ion homeostasis and zinc ion import into Golgi lumen. Located in endoplasmic reticulum. Is an ortholog of human SLC30A5 (solute carrier family 30 member 5).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY105E8A.3
Corresponding_CDS_historyY105E8A.3:wp89
Corresponding_transcriptY105E8A.3.1
Other_sequence (69)
Associated_featureWBsf643839
WBsf986144
WBsf1011236
WBsf218788
WBsf218789
Experimental_infoRNAi_resultWBRNAi00055231Inferred_automaticallyRNAi_primary
WBRNAi00116518Inferred_automaticallyRNAi_primary
WBRNAi00055230Inferred_automaticallyRNAi_primary
Expr_patternExpr9559
Expr1011718
Expr1036100
Expr1158767
Expr2006975
Expr2025197
Construct_productWBCnstr00014124
Microarray_results (19)
Expression_cluster (116)
InteractionWBInteraction000160526
WBInteraction000203113
WBInteraction000255409
WBInteraction000326097
WBInteraction000359808
WBInteraction000465737
WBInteraction000470458
WBInteraction000554721
WBInteraction000583989
WBInteraction000584348
Map_infoMapIPosition24.4563
PositivePositive_cloneY105E8AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038444
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene