WormBase Tree Display for Gene: WBGene00015412

WBGene00015412 SMap: S_parent: Sequence: C04C3
  Identity: Version: 2
    Name: CGC_name: lgc-9 Paper_evidence: WBPaper00029376
          Person_evidence: WBPerson1430
      Sequence_name: C04C3.2
      Molecular_name: C04C3.2
        C04C3.2.1
        CE29558
      Other_name: CELE_C04C3.2 Accession_evidence: NDB BX284604
      Public_name: lgc-9
    DB_info: Database: AceView gene 4E181
        WormQTL gene WBGene00015412
        WormFlux gene WBGene00015412
        NDB locus_tag CELE_C04C3.2
        Panther gene CAEEL|WormBase=WBGene00015412|UniProtKB=O44452
          family PTHR18945
        NCBI gene 182195
        RefSeq protein NM_067940.5
        TrEMBL UniProtAcc O44452
        UniProt_GCRP UniProtAcc O44452
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 May 2007 16:58:23 WBPerson2970 Name_change: CGC_name: lgc-9
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    Allele (58)
    Strain: WBStrain00035012
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog: WBGene00138161 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00039930 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00071941 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00194428 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g10867 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g8369 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g122 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g10864 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7569 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7916 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g16282 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g9399 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g25739 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19095 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      CSP40.g2517 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00015.g1027 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-lgc-9 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g9234 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01102.g18399 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_18482 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_015925 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03430 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g1476 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40052610 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9963 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00111295 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00267240 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog (100)
    Structured_description: Automated_description: Predicted to enable excitatory extracellular ligand-gated monoatomic ion channel activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in excitatory postsynaptic potential and monoatomic ion transmembrane transport. Predicted to be located in neuron projection and synapse. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C04C3.2
    Corresponding_transcript: C04C3.2.1
    Other_sequence (11)
    Associated_feature: WBsf995956
      WBsf1017075
      WBsf228098
  Experimental_info: RNAi_result: WBRNAi00102737 Inferred_automatically: RNAi_primary
      WBRNAi00039583 Inferred_automatically: RNAi_primary
      WBRNAi00010100 Inferred_automatically: RNAi_primary
      WBRNAi00028416 Inferred_automatically: RNAi_primary
      WBRNAi00066357 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011992
      Expr1143686
      Expr1200295
      Expr2013140
      Expr2031372
    Drives_construct: WBCnstr00028865
    Construct_product: WBCnstr00028865
    Microarray_results (17)
    Expression_cluster (57)
    Interaction: WBInteraction000031113
      WBInteraction000209003
      WBInteraction000384591
      WBInteraction000400265
      WBInteraction000512397
      WBInteraction000512398
      WBInteraction000512399
  Map_info: Map: IV Position: -4.44598 Error: 0.043633
    Positive: Positive_clone: C04C3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00064898
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene