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WormBase Tree Display for Gene: WBGene00015658

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Name Class

WBGene00015658SMapS_parentSequenceC09G12
IdentityVersion2
NameCGC_nametsg-101Person_evidenceWBPerson3188
WBPerson1816
Sequence_nameC09G12.9
Molecular_nameC09G12.9
C09G12.9.1
CE34675
Other_nameCELE_C09G12.9Accession_evidenceNDBBX284604
Public_nametsg-101
DB_infoDatabaseAceViewgene4E276
WormQTLgeneWBGene00015658
WormFluxgeneWBGene00015658
NDBlocus_tagCELE_C09G12.9
PanthergeneCAEEL|WormBase=WBGene00015658|UniProtKB=O76258
familyPTHR23306
NCBIgene182474
RefSeqproteinNM_067963.6
TREEFAMTREEFAM_IDTF312917
TrEMBLUniProtAccO76258
UniProt_GCRPUniProtAccO76258
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
230 Oct 2007 14:27:24WBPerson2970Name_changeCGC_nametsg-101
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtsg
Allele (77)
StrainWBStrain00002625
WBStrain00002534
WBStrain00051306
RNASeq_FPKM (74)
GO_annotation (13)
Contained_in_operonCEOP4088
OrthologWBGene00139189Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00163667Caenorhabditis brenneriFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00124715Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00070552Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00035381Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00097126Pristionchus pacificusFrom_analysisOMA
WBGene00142401Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00222377Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g10716Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g2029Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1233Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g2578Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g22154Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7307Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g7308Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12970Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g12971Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g3409Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1034Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g1035Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g15868Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7226Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g7227Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00407.g10439Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-tsg-101Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g20313Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01203.g19225Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_01203.g19226Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_013277Caenorhabditis remaneiFrom_analysisWormBase-Compara
Pan_g6914Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40252810Caenorhabditis inopinataFrom_analysisWormBase-Compara
Sp34_40252820Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g9989Caenorhabditis elegansFrom_analysisWormBase-Compara
chrIV_pilon.g9990Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00075386Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00077094Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00240756Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00263615Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00287604Trichuris murisFrom_analysisWormBase-Compara
SGD:S000000514Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Inparanoid
OMA
OrthoFinder
Panther
FB:FBgn0036666Drosophila melanogasterFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030217-1Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
ZFIN:ZDB-GENE-130530-542Danio rerioFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
HGNC:15971Homo sapiensFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:106581Mus musculusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:3909Rattus norvegicusFrom_analysisHieranoid
Inparanoid
OMA
OrthoInspector
Panther
SonicParanoid
Structured_descriptionConcise_descriptiontsg-101 encodes the C. elegans ortholog of S. cerevisiae vacuolar protein sorting protein Vps23p and human TUMOR SUSCEPTIBILITY GENE 101 (TSG101; OMIM:601387), mutations in which are associated with several types of cancer and with varying responses to HIV infection; TSG-101 is an essential component of the C. elegans ESCRT-1 (Endosomal Sorting Complex Required for Transport, other members include VPS-28, VPS-37, and MVB-12) that is required for cell surface receptor degradation via the multivesicular body sorting pathway and hence, downregulation of receptor activity.Paper_evidenceWBPaper00026641
WBPaper00031035
Curator_confirmedWBPerson1843
WBPerson1823
WBPerson567
Date_last_updated09 Jul 2010 00:00:00
Automated_descriptionPredicted to enable ubiquitin binding activity. Involved in endosome to lysosome transport via multivesicular body sorting pathway and receptor catabolic process. Located in endosome membrane. Part of ESCRT I complex. Expressed in head and tail. Human ortholog(s) of this gene implicated in breast carcinoma and reproductive organ cancer (multiple). Is an ortholog of human TSG101 (tumor susceptibility 101).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:10283Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:15971)
DOID:2893Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:15971)
DOID:2870Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:15971)
DOID:3459Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:15971)
DOID:2394Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:15971)
DOID:1612Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:15971)
Molecular_infoCorresponding_CDSC09G12.9
Corresponding_CDS_historyC09G12.9:wp105
Corresponding_transcriptC09G12.9.1
Other_sequence (26)
Associated_featureWBsf667837
Experimental_infoRNAi_result (12)
Expr_patternChronogram751
Chronogram1424
Expr5223
Expr5224
Expr1020827
Expr1036705
Expr1144298
Expr2017537
Expr2035675
Drives_constructWBCnstr00003110
WBCnstr00004547
WBCnstr00028680
Construct_productWBCnstr00028680
Microarray_results (20)
Expression_cluster (76)
Interaction (45)
Map_infoMapIVPosition-3.31212Error0.00351
PositivePositive_cloneC09G12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (12)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene