WormBase Tree Display for Gene: WBGene00015734

WBGene00015734 SMap: S_parent: Sequence: C13B9
  Identity: Version: 3
    Name: CGC_name: copd-1 Person_evidence: WBPerson3188
      Sequence_name: C13B9.3
      Molecular_name: C13B9.3
        C13B9.3.1
        CE01778
      Other_name: phi-30 Person_evidence: WBPerson2582
        CELE_C13B9.3 Accession_evidence: NDB BX284603
      Public_name: copd-1
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 08 Aug 2013 16:40:57 WBPerson2970 Name_change: CGC_name: copd-1
        3 08 Aug 2013 16:41:57 WBPerson2970 Name_change: CGC_name: copd-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: copd
    Allele (30)
    Strain: WBStrain00001556
      WBStrain00002238
      WBStrain00032746
    RNASeq_FPKM (74)
    GO_annotation (15)
    Ortholog: WBGene00035519 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00063483 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00154441 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00133954 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00141033 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222428 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g4173 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1188 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g3443 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1888 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g16220 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g5827 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g5893 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2664 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9969 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24509 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00378.g10004 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_10165.g22496 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-copd-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g17940 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_02877.g28224 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_21765 Caenorhabditis latens From_analysis: WormBase-Compara
      FL83_22685 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_011004 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g11610 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g9137 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g9143 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30178400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7984 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245350 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00282730 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00260755 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00299564 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000001947 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0028969 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-021031-2 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040121-7 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:649 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2387591 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1359110 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Concise_description: C13B9.3 encodes a delta subunit of the coatomer (COPI) complex; in mass RNAi assays, C13B9.3 is required for fertility and general health. Paper_evidence: WBPaper00004403
            WBPaper00005654
            WBPaper00006395
            WBPaper00012764
            WBPaper00012858
            WBPaper00012863
            WBPaper00012889
            WBPaper00013106
            WBPaper00013627
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to be involved in Golgi localization; endoplasmic reticulum to Golgi vesicle-mediated transport; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be located in COPI-coated vesicle membrane and Golgi membrane. Predicted to be part of COPI vesicle coat. Is an ortholog of human ARCN1 (archain 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C13B9.3
    Corresponding_transcript: C13B9.3.1
    Other_sequence (88)
    Associated_feature: WBsf655443
      WBsf667011
      WBsf667012
      WBsf667013
      WBsf226857
      WBsf226858
      WBsf226859
  Experimental_info: RNAi_result (11)
    Expr_pattern: Chronogram90
      Expr5248
      Expr5249
      Expr1023754
      Expr1036730
      Expr1144491
      Expr2010458
      Expr2028698
    Drives_construct: WBCnstr00002396
      WBCnstr00004328
      WBCnstr00028611
    Construct_product: WBCnstr00028611
    Microarray_results (20)
    Expression_cluster (120)
    Interaction (113)
  Map_info: Map: III Position: -1.03249
    Positive: Positive_clone: C13B9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00049828
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene