WormBase Tree Display for Gene: WBGene00016738
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WBGene00016738 | SMap | S_parent | Sequence | C47D2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | C47D2.1 | |||||||
Molecular_name | C47D2.1 | ||||||||
C47D2.1.1 | |||||||||
CE06961 | |||||||||
Other_name | CELE_C47D2.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | C47D2.1 | ||||||||
DB_info | Database | AceView | gene | XI831 | |||||
WormQTL | gene | WBGene00016738 | |||||||
WormFlux | gene | WBGene00016738 | |||||||
NDB | locus_tag | CELE_C47D2.1 | |||||||
NCBI | gene | 183545 | |||||||
RefSeq | protein | NM_076984.5 | |||||||
TREEFAM | TREEFAM_ID | TF319900 | |||||||
TrEMBL | UniProtAcc | Q22923 | |||||||
UniProt_GCRP | UniProtAcc | Q22923 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (21) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00076748 | ||||||||
Ortholog | WBGene00041211 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||
WormBase-Compara | |||||||||
WBGene00058796 | Caenorhabditis remanei | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00140765 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
TreeFam | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00176523 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
CSP26.g15146 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g14186 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g23063 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP32.g3927 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP39.g9091 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g2677 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-C47D2.1 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g10169 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00093.g4050 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_01967 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_025356 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_X0159300 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrX_pilon.g19535 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Enriched in head mesodermal cell; intestine; and neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including pgl-1; aak-2; and isp-1 based on microarray and RNA-seq studies. Is affected by seven chemicals including D-glucose; Psoralens; and allantoin based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C47D2.1 | |||||||
Corresponding_transcript | C47D2.1.1 | ||||||||
Associated_feature | WBsf236032 | ||||||||
Experimental_info | RNAi_result | WBRNAi00029905 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00042670 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00012072 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1022147 | ||||||||
Expr1146657 | |||||||||
Expr2001710 | |||||||||
Expr2019937 | |||||||||
Drives_construct | WBCnstr00027841 | ||||||||
Construct_product | WBCnstr00027841 | ||||||||
Microarray_results (17) | |||||||||
Expression_cluster (128) | |||||||||
Interaction (11) | |||||||||
Map_info | Positive | Positive_clone | C47D2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | X | -0.338406 | |||||||
Method | Gene |