WormBase Tree Display for Gene: WBGene00016912

WBGene00016912 SMap: S_parent: Sequence: C54D1
  Identity (6)
  Gene_info: Biotype: SO:0001217
    Gene_class: clec
    Allele (12)
    RNASeq_FPKM (74)
    GO_annotation: 00062464
      00062465
      00062466
    Ortholog: WBGene00051377 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00032201 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00149449 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00130112 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00157020 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      CSP26.g9004 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g2805 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP39.g7692 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      Cni-clec-86 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold578.g4498 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00059.g2902 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_00234 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_024711 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrX_pilon.g19355 Caenorhabditis elegans From_analysis: WormBase-Compara
      FB:FBgn0040502 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            Panther
      HGNC:9951 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      HGNC:9952 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      HGNC:29595 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:97478 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:97895 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OrthoInspector
      MGI:97896 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
      MGI:1916392 Mus musculus From_analysis: Inparanoid
            Panther
            SonicParanoid
      MGI:1917442 Mus musculus From_analysis: Inparanoid
            Panther
            SonicParanoid
      RGD:3254 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoInspector
    Paralog (25)
    Structured_description: Automated_description: Predicted to enable carbohydrate binding activity. Involved in innate immune response. Predicted to be located in external side of plasma membrane. Human ortholog(s) of this gene implicated in Alzheimer's disease; autoimmune disease (multiple); and cholangiocarcinoma. Is an ortholog of human REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3G (regenerating family member 3 gamma). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:10652 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:9951)
      DOID:9744 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:9951)
      DOID:4947 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:9951)
      DOID:12894 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:9951)
  Molecular_info: Corresponding_CDS: C54D1.2
    Corresponding_transcript: C54D1.2.1
    Other_sequence: CBC03154_1
    Associated_feature: WBsf648279
      WBsf235901
  Experimental_info: RNAi_result (5)
    Expr_pattern: Expr1010355
      Expr1037257
      Expr1147096
      Expr2010217
      Expr2028458
    Drives_construct: WBCnstr00027710
    Construct_product: WBCnstr00027710
    Microarray_results (19)
    Expression_cluster (249)
    Interaction: WBInteraction000031645
      WBInteraction000234585
  Map_info: Map: X Position: -1.82766
    Positive: Positive_clone: C54D1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027722
    WBPaper00031686
    WBPaper00033987
    WBPaper00037524
    WBPaper00038491
    WBPaper00055090
    WBPaper00065681
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene