WormBase Tree Display for Gene: WBGene00017544

WBGene00017544 SMap: S_parent: Sequence: F17E9
  Identity: Version: 2
    Name: CGC_name: lgc-6 Paper_evidence: WBPaper00029376
          Person_evidence: WBPerson1430
      Sequence_name: F17E9.8
      Molecular_name: F17E9.8
        F17E9.8.1
        CE47516
      Other_name: CELE_F17E9.8 Accession_evidence: NDB BX284604
      Public_name: lgc-6
    DB_info: Database: AceView gene 4J107
        WormQTL gene WBGene00017544
        WormFlux gene WBGene00017544
        NDB locus_tag CELE_F17E9.8
        Panther gene CAEEL|WormBase=WBGene00017544|UniProtKB=O61519
          family PTHR18945
        NCBI gene 184621
        RefSeq protein NM_069009.3
        TREEFAM TREEFAM_ID TF319821
        TrEMBL UniProtAcc O61519
        UniProt_GCRP UniProtAcc O61519
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 May 2007 16:58:23 WBPerson2970 Name_change: CGC_name: lgc-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: lgc
    Allele (21)
    Strain: WBStrain00037881
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog: WBGene00059474 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00149105 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00192627 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00073650 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00024816 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g11310 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2878 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g20065 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g7034 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7157 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g12746 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12836 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8354 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g28877 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g12947 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00697.g13515 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00697.g13518 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_17829.g25813 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_IV.g14734 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g7560 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00524.g12445 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16359 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014702 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g09577 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_40113600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g11048 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00276047 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00280196 Pristionchus pacificus From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-071012-5 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
    Paralog (100)
    Structured_description: Automated_description: Predicted to enable excitatory extracellular ligand-gated monoatomic ion channel activity and transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in excitatory postsynaptic potential and monoatomic ion transmembrane transport. Predicted to be located in neuron projection and synapse. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F17E9.8
    Corresponding_CDS_history: F17E9.8:wp176
      F17E9.8:wp231
    Corresponding_transcript: F17E9.8.1
    Other_sequence: EX558322.1
      Acan_isotig12776
    Associated_feature: WBsf646158
  Experimental_info: RNAi_result: WBRNAi00044899 Inferred_automatically: RNAi_primary
      WBRNAi00066360 Inferred_automatically: RNAi_primary
      WBRNAi00102739 Inferred_automatically: RNAi_primary
      WBRNAi00013477 Inferred_automatically: RNAi_primary
      WBRNAi00044900 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1016141
      Expr1148870
      Expr2013137
      Expr2031369
    Microarray_results (17)
    Expression_cluster (41)
    Interaction: WBInteraction000201519
      WBInteraction000210116
      WBInteraction000229030
      WBInteraction000244876
      WBInteraction000352118
      WBInteraction000389029
  Map_info: Map: IV Position: 3.71004 Error: 0.000715
    Positive: Positive_clone: F17E9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene