WormBase Tree Display for Gene: WBGene00020559

WBGene00020559 SMap: S_parent: Sequence: T19C3
  Identity: Version: 2
    Name: CGC_name: best-17 Person_evidence: WBPerson260
      Sequence_name: T19C3.1
      Molecular_name: T19C3.1
        T19C3.1.1
        CE53916
      Other_name: CELE_T19C3.1 Accession_evidence: NDB BX284603
      Public_name: best-17
    DB_info: Database: AceView gene 3B226
        WormQTL gene WBGene00020559
        WormFlux gene WBGene00020559
        NDB locus_tag CELE_T19C3.1
        Panther gene CAEEL|WormBase=WBGene00020559|UniProtKB=Q22566
          family PTHR10736
        NCBI gene 188585
        RefSeq protein NM_001377915.1
        SwissProt UniProtAcc Q22566
        UniProt_GCRP UniProtAcc Q22566
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 07 Feb 2012 16:30:56 WBPerson2970 Name_change: CGC_name: best-17
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: best
    Allele (80)
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog: WBGene00164183 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00035576 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00064844 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00136728 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00218237 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      CBOVI.g4090 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g11172 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g12544 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22350 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g4035 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6765 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g11076 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g8211 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g29511 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g4046 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g6851 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00250.g7897 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_06462.g20281 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_08613.g21607 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_16624.g25420 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-best-17 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_02392.g26283 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19066 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_011893 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_30327300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g6781 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00211058 Caenorhabditis japonica From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-070912-6 Danio rerio From_analysis: OMA
            OrthoFinder
            Panther
      HGNC:17107 Homo sapiens From_analysis: OMA
            OrthoFinder
            Panther
      HGNC:17106 Homo sapiens From_analysis: OMA
            OrthoFinder
            Panther
      MGI:1346332 Mus musculus From_analysis: OMA
            OrthoFinder
            Panther
      MGI:2387588 Mus musculus From_analysis: OMA
            OrthoFinder
            Panther
      RGD:1311656 Rattus norvegicus From_analysis: OMA
            OrthoFinder
            Panther
      RGD:1305377 Rattus norvegicus From_analysis: OMA
            OrthoFinder
            Panther
      RGD:1596200 Rattus norvegicus From_analysis: OMA
            OrthoFinder
            Panther
    Paralog (26)
    Structured_description: Automated_description: Predicted to enable chloride channel activity. Predicted to be involved in chloride transmembrane transport. Predicted to be located in plasma membrane. Predicted to be part of chloride channel complex. Is an ortholog of human BEST2 (bestrophin 2) and BEST4 (bestrophin 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T19C3.1
    Corresponding_CDS_history: T19C3.1:wp274
    Corresponding_transcript: T19C3.1.1
    Other_sequence: CJC03517_1
      CJC02875_1
      MI04706
      FD516953.1
      MIC03479_1
      FD514567.1
      CSC01985_1
    Associated_feature: WBsf666529
      WBsf666530
  Experimental_info: RNAi_result: WBRNAi00053504 Inferred_automatically: RNAi_primary
      WBRNAi00018823 Inferred_automatically: RNAi_primary
      WBRNAi00006600 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017459
      Expr1157071
      Expr2009598
      Expr2027835
    Drives_construct: WBCnstr00025052
    Construct_product: WBCnstr00025052
    Microarray_results (19)
    Expression_cluster (138)
    Interaction: WBInteraction000282105
  Map_info: Map: III Position: -26.548
    Positive: Positive_clone: T19C3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00062388
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene