WormBase Tree Display for Gene: WBGene00021075

WBGene00021075 SMap: S_parent: Sequence: W07E6
  Identity: Version: 2
    Name: CGC_name: sms-5 Paper_evidence: WBPaper00057293
          Person_evidence: WBPerson1820
          Author_evidence
      Sequence_name: W07E6.3
      Molecular_name: W07E6.3b
        W07E6.3b.1
        CE49035
        W07E6.3c
        CE48509
        W07E6.3c.1
      Other_name: CELE_W07E6.3 Accession_evidence: NDB BX284602
      Public_name: sms-5
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 11 Dec 2018 16:50:34 WBPerson1983 Name_change: CGC_name: sms-5,
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sms
    Allele (74)
    Strain: WBStrain00032604
    RNASeq_FPKM (74)
    GO_annotation (13)
    Ortholog: WBGene00029227 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00064203 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00151551 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00128948 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00147899 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00136535 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00052079 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00226486 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6402 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6952 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g10267 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18291 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17534 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g25697 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g896 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g6502 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g3972 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g22592 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00828.g14423 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-W07E6.3 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp5_scaffold_01425.g20850 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_15714 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_007969 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g14846 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g15298 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20009200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g3125 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247963 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00278642 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00265469 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00265707 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00004892 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004893 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004894 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00018735 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ceramide cholinephosphotransferase activity and sphingomyelin synthase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin biosynthetic process. Predicted to be located in membrane. Expressed in marginal cell; pharyngeal muscle cell; pharynx; and spermatheca. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W07E6.3b
      W07E6.3c
    Corresponding_CDS_history: W07E6.3a:wp250
    Corresponding_transcript: W07E6.3b.1
      W07E6.3c.1
    Other_sequence (192)
    Associated_feature: WBsf717621
      WBsf220759
  Experimental_info: RNAi_result: WBRNAi00054951 Inferred_automatically: RNAi_primary
      WBRNAi00019699 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr14868
      Expr14869
      Expr1019120
      Expr1158485
      Expr2006841
      Expr2025066
    Drives_construct: WBCnstr00024694
      WBCnstr00041565
    Construct_product: WBCnstr00024694
      WBCnstr00041565
    Microarray_results (24)
    Expression_cluster (99)
    Interaction: WBInteraction000423653
      WBInteraction000457506
  Map_info: Map: II Position: -15.6005
    Positive: Positive_clone: W07E6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00057293
    WBPaper00060052
    WBPaper00061422
    WBPaper00063285
    WBPaper00066145
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene