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WormBase Tree Display for Gene: WBGene00021222

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Name Class

WBGene00021222SMapS_parentSequenceY19D10A
IdentityVersion2
NameCGC_nameirld-53Person_evidenceWBPerson260
Sequence_nameY19D10A.7
Molecular_name (16)
Other_nameY19D10A.hCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y19D10A.7Accession_evidenceNDBBX284605
Public_nameirld-53
DB_infoDatabaseAceViewgene5C824
WormQTLgeneWBGene00021222
WormFluxgeneWBGene00021222
NDBlocus_tagCELE_Y19D10A.7
NCBIgene189485
RefSeqproteinNM_001316836.1
NM_001316837.1
NM_001316775.1
NM_001316835.1
NR_133585.1
NR_133586.1
NR_133588.1
NR_133587.1
TrEMBLUniProtAccA0A0M7REC9
A0A0M7RDW6
A0A0M7REQ9
Q966E0
UniProt_GCRPUniProtAccQ966E0
RNAcentralURSidURS00008D5904
URS00008D7F7D
URS00008DCEE1
URS00008E0B18
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
225 May 2012 15:57:08WBPerson2970Name_changeCGC_nameirld-53
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classirld
AlleleWBVar01499528
WBVar01499167
WBVar01499537
WBVar01585457
WBVar01499740
WBVar02046235
WBVar01971643
WBVar01499496
WBVar01499316
WBVar01500066
RNASeq_FPKM (74)
OrthologWBGene00024416Caenorhabditis briggsaeFrom_analysisOMA
WBGene00028739Caenorhabditis briggsaeFrom_analysisOMA
WBGene00028771Caenorhabditis briggsaeFrom_analysisOMA
WBGene00034524Caenorhabditis briggsaeFrom_analysisOMA
WBGene00024408Caenorhabditis briggsaeFrom_analysisOrthoMCL
WormBase-Compara
WBGene00152193Caenorhabditis brenneriFrom_analysisOMA
WormBase-Compara
WBGene00162184Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00207242Caenorhabditis japonicaFrom_analysisInparanoid_8
CSP21.g8710Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g2672Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g4263Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g8016Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g11349Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12685Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12687Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12688Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12691Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12692Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12694Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12695Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12696Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12697Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12698Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12699Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12700Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12701Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12702Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12703Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12704Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12705Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12706Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12707Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g12708Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g18878Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g18880Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g18885Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g18887Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g24179Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2719Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g27557Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g27558Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g27559Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g27560Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g27561Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g27566Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g27568Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g27571Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g684Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g7015Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g8118Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g8119Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g8120Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10503Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g6005Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g6006Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5240Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00253.g7938Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_V.g17948Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_V.g17949Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold463.g1545Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_11033.g40247Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_06119Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_020920Caenorhabditis remaneiFrom_analysisWormBase-Compara
chrV_pilon.g13467Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00061149Caenorhabditis remaneiFrom_analysisWormBase-Compara
Paralog (67)
Structured_descriptionAutomated_descriptionEnriched in DD neuron; intestine; and neurons based on RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-12; and hsf-1 based on microarray; quantitative PCR; tiling array; and RNA-seq studies. Is affected by ten chemicals including fluvastatin; Progesterone; and Atrazine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Receptor L domain; Receptor L-domain; and Receptor L-domain superfamily.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY19D10A.7a
Y19D10A.7b
Y19D10A.7g
Y19D10A.7h
Corresponding_transcriptY19D10A.7c
Y19D10A.7d
Y19D10A.7e
Y19D10A.7f
Y19D10A.7a.1
Y19D10A.7b.1
Y19D10A.7g.1
Y19D10A.7h.1
Experimental_infoRNAi_resultWBRNAi00032922Inferred_automaticallyRNAi_primary
WBRNAi00013378Inferred_automaticallyRNAi_primary
WBRNAi00044725Inferred_automaticallyRNAi_primary
WBRNAi00048605Inferred_automaticallyRNAi_primary
WBRNAi00044723Inferred_automaticallyRNAi_primary
Expr_patternExpr1159160
Drives_constructWBCnstr00024616
Construct_productWBCnstr00024616
Microarray_results (21)
Expression_cluster (114)
InteractionWBInteraction000503278
WBInteraction000503790
Map_infoMapVPosition-14.8601
PositivePositive_cloneY19D10AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene